../benchmarks/__init__.py
../benchmarks/benchmarks.py
../skbio/__init__.py
../skbio/_base.py
../skbio/test.py
../skbio/workflow.py
../skbio/alignment/__init__.py
../skbio/alignment/_indexing.py
../skbio/alignment/_pairwise.py
../skbio/alignment/_repr.py
../skbio/alignment/_tabular_msa.py
../skbio/diversity/__init__.py
../skbio/diversity/_block.py
../skbio/diversity/_driver.py
../skbio/diversity/_util.py
../skbio/io/__init__.py
../skbio/io/_exception.py
../skbio/io/_fileobject.py
../skbio/io/_iosources.py
../skbio/io/_warning.py
../skbio/io/registry.py
../skbio/io/util.py
../skbio/metadata/__init__.py
../skbio/metadata/_interval.py
../skbio/metadata/_mixin.py
../skbio/metadata/_repr.py
../skbio/metadata/_testing.py
../skbio/sequence/__init__.py
../skbio/sequence/_dna.py
../skbio/sequence/_genetic_code.py
../skbio/sequence/_grammared_sequence.py
../skbio/sequence/_nucleotide_mixin.py
../skbio/sequence/_protein.py
../skbio/sequence/_repr.py
../skbio/sequence/_rna.py
../skbio/sequence/_sequence.py
../skbio/sequence/distance.py
../skbio/stats/__init__.py
../skbio/stats/_misc.py
../skbio/stats/_subsample.py
../skbio/stats/composition.py
../skbio/stats/gradient.py
../skbio/stats/power.py
../skbio/tests/__init__.py
../skbio/tests/test_base.py
../skbio/tests/test_workflow.py
../skbio/tree/__init__.py
../skbio/tree/_exception.py
../skbio/tree/_majority_rule.py
../skbio/tree/_nj.py
../skbio/tree/_tree.py
../skbio/util/__init__.py
../skbio/util/_decorator.py
../skbio/util/_exception.py
../skbio/util/_misc.py
../skbio/util/_testing.py
../skbio/util/_warning.py
../skbio/alignment/_lib/__init__.py
../skbio/alignment/tests/__init__.py
../skbio/alignment/tests/test_pairwise.py
../skbio/alignment/tests/test_ssw.py
../skbio/alignment/tests/test_tabular_msa.py
../skbio/diversity/alpha/__init__.py
../skbio/diversity/alpha/_ace.py
../skbio/diversity/alpha/_base.py
../skbio/diversity/alpha/_chao1.py
../skbio/diversity/alpha/_faith_pd.py
../skbio/diversity/alpha/_gini.py
../skbio/diversity/alpha/_lladser.py
../skbio/diversity/beta/__init__.py
../skbio/diversity/beta/_unifrac.py
../skbio/diversity/tests/__init__.py
../skbio/diversity/tests/test_block.py
../skbio/diversity/tests/test_driver.py
../skbio/diversity/tests/test_util.py
../skbio/diversity/alpha/tests/__init__.py
../skbio/diversity/alpha/tests/test_ace.py
../skbio/diversity/alpha/tests/test_base.py
../skbio/diversity/alpha/tests/test_chao1.py
../skbio/diversity/alpha/tests/test_faith_pd.py
../skbio/diversity/alpha/tests/test_gini.py
../skbio/diversity/alpha/tests/test_lladser.py
../skbio/diversity/beta/tests/__init__.py
../skbio/diversity/beta/tests/test_unifrac.py
../skbio/io/format/__init__.py
../skbio/io/format/_base.py
../skbio/io/format/_blast.py
../skbio/io/format/_sequence_feature_vocabulary.py
../skbio/io/format/blast6.py
../skbio/io/format/blast7.py
../skbio/io/format/clustal.py
../skbio/io/format/embl.py
../skbio/io/format/emptyfile.py
../skbio/io/format/fasta.py
../skbio/io/format/fastq.py
../skbio/io/format/genbank.py
../skbio/io/format/gff3.py
../skbio/io/format/lsmat.py
../skbio/io/format/newick.py
../skbio/io/format/ordination.py
../skbio/io/format/phylip.py
../skbio/io/format/qseq.py
../skbio/io/format/stockholm.py
../skbio/io/tests/__init__.py
../skbio/io/tests/test_iosources.py
../skbio/io/tests/test_registry.py
../skbio/io/tests/test_util.py
../skbio/io/format/tests/__init__.py
../skbio/io/format/tests/test_base.py
../skbio/io/format/tests/test_blast6.py
../skbio/io/format/tests/test_blast7.py
../skbio/io/format/tests/test_clustal.py
../skbio/io/format/tests/test_embl.py
../skbio/io/format/tests/test_emptyfile.py
../skbio/io/format/tests/test_fasta.py
../skbio/io/format/tests/test_fastq.py
../skbio/io/format/tests/test_genbank.py
../skbio/io/format/tests/test_gff3.py
../skbio/io/format/tests/test_lsmat.py
../skbio/io/format/tests/test_newick.py
../skbio/io/format/tests/test_ordination.py
../skbio/io/format/tests/test_phylip.py
../skbio/io/format/tests/test_qseq.py
../skbio/io/format/tests/test_sequence_feature_vocabulary.py
../skbio/io/format/tests/test_stockholm.py
../skbio/metadata/tests/__init__.py
../skbio/metadata/tests/test_intersection.py
../skbio/metadata/tests/test_interval.py
../skbio/metadata/tests/test_mixin.py
../skbio/sequence/tests/__init__.py
../skbio/sequence/tests/test_distance.py
../skbio/sequence/tests/test_dna.py
../skbio/sequence/tests/test_genetic_code.py
../skbio/sequence/tests/test_grammared_sequence.py
../skbio/sequence/tests/test_nucleotide_sequences.py
../skbio/sequence/tests/test_protein.py
../skbio/sequence/tests/test_rna.py
../skbio/sequence/tests/test_sequence.py
../skbio/stats/distance/__init__.py
../skbio/stats/distance/_anosim.py
../skbio/stats/distance/_base.py
../skbio/stats/distance/_bioenv.py
../skbio/stats/distance/_mantel.py
../skbio/stats/distance/_permanova.py
../skbio/stats/evolve/__init__.py
../skbio/stats/evolve/_hommola.py
../skbio/stats/ordination/__init__.py
../skbio/stats/ordination/_canonical_correspondence_analysis.py
../skbio/stats/ordination/_correspondence_analysis.py
../skbio/stats/ordination/_ordination_results.py
../skbio/stats/ordination/_principal_coordinate_analysis.py
../skbio/stats/ordination/_redundancy_analysis.py
../skbio/stats/ordination/_utils.py
../skbio/stats/tests/__init__.py
../skbio/stats/tests/test_composition.py
../skbio/stats/tests/test_gradient.py
../skbio/stats/tests/test_misc.py
../skbio/stats/tests/test_power.py
../skbio/stats/tests/test_subsample.py
../skbio/stats/distance/tests/__init__.py
../skbio/stats/distance/tests/test_anosim.py
../skbio/stats/distance/tests/test_base.py
../skbio/stats/distance/tests/test_bioenv.py
../skbio/stats/distance/tests/test_mantel.py
../skbio/stats/distance/tests/test_permanova.py
../skbio/stats/evolve/tests/__init__.py
../skbio/stats/evolve/tests/test_hommola.py
../skbio/stats/ordination/tests/__init__.py
../skbio/stats/ordination/tests/test_canonical_correspondence_analysis.py
../skbio/stats/ordination/tests/test_correspondence_analysis.py
../skbio/stats/ordination/tests/test_ordination_results.py
../skbio/stats/ordination/tests/test_principal_coordinate_analysis.py
../skbio/stats/ordination/tests/test_redundancy_analysis.py
../skbio/stats/ordination/tests/test_util.py
../skbio/tree/tests/__init__.py
../skbio/tree/tests/test_majority_rule.py
../skbio/tree/tests/test_nj.py
../skbio/tree/tests/test_tree.py
../skbio/util/tests/__init__.py
../skbio/util/tests/test_decorator.py
../skbio/util/tests/test_misc.py
../skbio/util/tests/test_testing.py
../skbio/diversity/alpha/tests/data/qiime-191-tt/faith-pd.txt
../skbio/diversity/alpha/tests/data/qiime-191-tt/otu-table.tsv
../skbio/diversity/alpha/tests/data/qiime-191-tt/README.md
../skbio/diversity/alpha/tests/data/qiime-191-tt/tree.nwk
../skbio/diversity/beta/tests/data/qiime-191-tt/otu-table.tsv
../skbio/diversity/beta/tests/data/qiime-191-tt/README.md
../skbio/diversity/beta/tests/data/qiime-191-tt/tree.nwk
../skbio/diversity/beta/tests/data/qiime-191-tt/unweighted_unifrac_dm.txt
../skbio/diversity/beta/tests/data/qiime-191-tt/weighted_normalized_unifrac_dm.txt
../skbio/diversity/beta/tests/data/qiime-191-tt/weighted_unifrac_dm.txt
../skbio/io/tests/data/big5_file
../skbio/io/tests/data/big5_file.bz2
../skbio/io/tests/data/big5_file.gz
../skbio/io/tests/data/example_file
../skbio/io/tests/data/example_file.bz2
../skbio/io/tests/data/example_file.gz
../skbio/io/tests/data/real_file
../skbio/io/tests/data/real_file_2
../skbio/io/format/tests/data/blast6_custom_minimal
../skbio/io/format/tests/data/blast6_custom_mixed_nans
../skbio/io/format/tests/data/blast6_custom_multi_line
../skbio/io/format/tests/data/blast6_custom_single_line
../skbio/io/format/tests/data/blast6_default_multi_line
../skbio/io/format/tests/data/blast6_default_single_line
../skbio/io/format/tests/data/blast6_invalid_column_types
../skbio/io/format/tests/data/blast6_invalid_number_of_columns
../skbio/io/format/tests/data/blast6_invalid_type_in_column
../skbio/io/format/tests/data/blast7_custom_minimal
../skbio/io/format/tests/data/blast7_custom_mixed_nans
../skbio/io/format/tests/data/blast7_custom_multi_line
../skbio/io/format/tests/data/blast7_custom_single_line
../skbio/io/format/tests/data/blast7_default_multi_line
../skbio/io/format/tests/data/blast7_default_single_line
../skbio/io/format/tests/data/blast7_invalid_differing_fields
../skbio/io/format/tests/data/blast7_invalid_for_sniffer
../skbio/io/format/tests/data/blast7_invalid_for_sniffer_2
../skbio/io/format/tests/data/blast7_invalid_gibberish
../skbio/io/format/tests/data/blast7_invalid_no_data
../skbio/io/format/tests/data/blast7_invalid_too_many_columns
../skbio/io/format/tests/data/blast7_invalid_unrecognized_field
../skbio/io/format/tests/data/embl_constructed
../skbio/io/format/tests/data/embl_feature_level_record
../skbio/io/format/tests/data/embl_feature_level_record_no_FT
../skbio/io/format/tests/data/embl_multi_records
../skbio/io/format/tests/data/embl_single_record
../skbio/io/format/tests/data/embl_single_record_lower
../skbio/io/format/tests/data/embl_single_record_simple
../skbio/io/format/tests/data/embl_single_record_upper
../skbio/io/format/tests/data/embl_uniprot_record
../skbio/io/format/tests/data/embl_w_beginning_whitespace
../skbio/io/format/tests/data/empty
../skbio/io/format/tests/data/error_diff_ids.fastq
../skbio/io/format/tests/data/error_double_qual.fastq
../skbio/io/format/tests/data/error_double_seq.fastq
../skbio/io/format/tests/data/error_long_qual.fastq
../skbio/io/format/tests/data/error_no_qual.fastq
../skbio/io/format/tests/data/error_qual_del.fastq
../skbio/io/format/tests/data/error_qual_escape.fastq
../skbio/io/format/tests/data/error_qual_null.fastq
../skbio/io/format/tests/data/error_qual_space.fastq
../skbio/io/format/tests/data/error_qual_tab.fastq
../skbio/io/format/tests/data/error_qual_unit_sep.fastq
../skbio/io/format/tests/data/error_qual_vtab.fastq
../skbio/io/format/tests/data/error_short_qual.fastq
../skbio/io/format/tests/data/error_spaces.fastq
../skbio/io/format/tests/data/error_tabs.fastq
../skbio/io/format/tests/data/error_trunc_at_plus.fastq
../skbio/io/format/tests/data/error_trunc_at_qual.fastq
../skbio/io/format/tests/data/error_trunc_at_seq.fastq
../skbio/io/format/tests/data/error_trunc_in_plus.fastq
../skbio/io/format/tests/data/error_trunc_in_qual.fastq
../skbio/io/format/tests/data/error_trunc_in_seq.fastq
../skbio/io/format/tests/data/error_trunc_in_title.fastq
../skbio/io/format/tests/data/fasta_10_seqs
../skbio/io/format/tests/data/fasta_3_seqs_defaults
../skbio/io/format/tests/data/fasta_3_seqs_non_defaults
../skbio/io/format/tests/data/fasta_5_blanks_start_of_file
../skbio/io/format/tests/data/fasta_5_ws_lines_start_of_file
../skbio/io/format/tests/data/fasta_6_blanks_start_of_file
../skbio/io/format/tests/data/fasta_6_ws_lines_start_of_file
../skbio/io/format/tests/data/fasta_blank_lines_between_records
../skbio/io/format/tests/data/fasta_blanks_end_of_file
../skbio/io/format/tests/data/fasta_description_newline_replacement_empty_str
../skbio/io/format/tests/data/fasta_description_newline_replacement_multi_char
../skbio/io/format/tests/data/fasta_description_newline_replacement_none
../skbio/io/format/tests/data/fasta_id_whitespace_replacement_empty_str
../skbio/io/format/tests/data/fasta_id_whitespace_replacement_multi_char
../skbio/io/format/tests/data/fasta_id_whitespace_replacement_none
../skbio/io/format/tests/data/fasta_invalid_after_10_seqs
../skbio/io/format/tests/data/fasta_invalid_blank_line_after_header
../skbio/io/format/tests/data/fasta_invalid_blank_line_within_sequence
../skbio/io/format/tests/data/fasta_invalid_blank_sequence
../skbio/io/format/tests/data/fasta_invalid_legacy_format
../skbio/io/format/tests/data/fasta_invalid_missing_header
../skbio/io/format/tests/data/fasta_invalid_missing_seq_data_first
../skbio/io/format/tests/data/fasta_invalid_missing_seq_data_last
../skbio/io/format/tests/data/fasta_invalid_missing_seq_data_middle
../skbio/io/format/tests/data/fasta_invalid_whitespace_line_after_header
../skbio/io/format/tests/data/fasta_invalid_whitespace_only_line_within_sequence
../skbio/io/format/tests/data/fasta_invalid_whitespace_only_sequence
../skbio/io/format/tests/data/fasta_max_width_1
../skbio/io/format/tests/data/fasta_max_width_5
../skbio/io/format/tests/data/fasta_mixed_qual_scores
../skbio/io/format/tests/data/fasta_multi_seq
../skbio/io/format/tests/data/fasta_multi_seq_roundtrip
../skbio/io/format/tests/data/fasta_prot_seqs_odd_labels
../skbio/io/format/tests/data/fasta_single_bio_seq_defaults
../skbio/io/format/tests/data/fasta_single_bio_seq_non_defaults
../skbio/io/format/tests/data/fasta_single_dna_seq_defaults
../skbio/io/format/tests/data/fasta_single_dna_seq_non_defaults
../skbio/io/format/tests/data/fasta_single_prot_seq_defaults
../skbio/io/format/tests/data/fasta_single_prot_seq_non_defaults
../skbio/io/format/tests/data/fasta_single_rna_seq_defaults
../skbio/io/format/tests/data/fasta_single_rna_seq_non_defaults
../skbio/io/format/tests/data/fasta_single_seq
../skbio/io/format/tests/data/fasta_tabular_msa_different_type
../skbio/io/format/tests/data/fasta_ws_lines_between_records
../skbio/io/format/tests/data/fasta_ws_lines_end_of_file
../skbio/io/format/tests/data/fastq_5_blanks_start_of_file
../skbio/io/format/tests/data/fastq_5_ws_lines_start_of_file
../skbio/io/format/tests/data/fastq_blank_lines
../skbio/io/format/tests/data/fastq_invalid_blank_after_header
../skbio/io/format/tests/data/fastq_invalid_blank_after_plus
../skbio/io/format/tests/data/fastq_invalid_blank_after_seq
../skbio/io/format/tests/data/fastq_invalid_blank_in_seq_at_symbol
../skbio/io/format/tests/data/fastq_invalid_blank_within_qual
../skbio/io/format/tests/data/fastq_invalid_blank_within_seq
../skbio/io/format/tests/data/fastq_invalid_missing_header
../skbio/io/format/tests/data/fastq_invalid_missing_seq_data
../skbio/io/format/tests/data/fastq_invalid_ws_line_after_header
../skbio/io/format/tests/data/fastq_invalid_ws_line_after_plus
../skbio/io/format/tests/data/fastq_invalid_ws_line_after_seq
../skbio/io/format/tests/data/fastq_invalid_ws_line_within_qual
../skbio/io/format/tests/data/fastq_invalid_ws_line_within_seq
../skbio/io/format/tests/data/fastq_multi_blank_between_records
../skbio/io/format/tests/data/fastq_multi_blank_end_of_file
../skbio/io/format/tests/data/fastq_multi_blank_start_of_file
../skbio/io/format/tests/data/fastq_multi_seq_sanger
../skbio/io/format/tests/data/fastq_multi_whitespace_stripping
../skbio/io/format/tests/data/fastq_multi_ws_lines_between_records
../skbio/io/format/tests/data/fastq_multi_ws_lines_end_of_file
../skbio/io/format/tests/data/fastq_multi_ws_lines_start_of_file
../skbio/io/format/tests/data/fastq_single_seq_illumina1.3
../skbio/io/format/tests/data/fastq_single_seq_illumina1.8
../skbio/io/format/tests/data/fastq_whitespace_only_lines
../skbio/io/format/tests/data/fastq_wrapping_as_illumina_no_description
../skbio/io/format/tests/data/fastq_wrapping_as_sanger_no_description
../skbio/io/format/tests/data/fastq_wrapping_original_sanger_no_description
../skbio/io/format/tests/data/fastq_writer_illumina1.3_defaults
../skbio/io/format/tests/data/fastq_writer_sanger_defaults
../skbio/io/format/tests/data/fastq_writer_sanger_non_defaults
../skbio/io/format/tests/data/genbank_5_blanks_start_of_file
../skbio/io/format/tests/data/genbank_6_blanks_start_of_file
../skbio/io/format/tests/data/genbank_missing_locus_name
../skbio/io/format/tests/data/genbank_multi_records
../skbio/io/format/tests/data/genbank_single_record
../skbio/io/format/tests/data/genbank_single_record_lower
../skbio/io/format/tests/data/genbank_single_record_upper
../skbio/io/format/tests/data/genbank_w_beginning_whitespace
../skbio/io/format/tests/data/gff3_bad_missing_directive
../skbio/io/format/tests/data/gff3_bad_wrong_columns
../skbio/io/format/tests/data/gff3_dna
../skbio/io/format/tests/data/gff3_multi_record
../skbio/io/format/tests/data/gff3_single_record
../skbio/io/format/tests/data/illumina_full_range_as_illumina.fastq
../skbio/io/format/tests/data/illumina_full_range_as_sanger.fastq
../skbio/io/format/tests/data/illumina_full_range_original_illumina.fastq
../skbio/io/format/tests/data/legacy9_and_blast7_default
../skbio/io/format/tests/data/legacy9_invalid_differing_fields
../skbio/io/format/tests/data/legacy9_invalid_too_many_columns
../skbio/io/format/tests/data/legacy9_mixed_nans
../skbio/io/format/tests/data/legacy9_multi_line
../skbio/io/format/tests/data/legacy9_single_line
../skbio/io/format/tests/data/longreads_as_illumina.fastq
../skbio/io/format/tests/data/longreads_as_sanger.fastq
../skbio/io/format/tests/data/longreads_original_sanger.fastq
../skbio/io/format/tests/data/misc_dna_as_illumina.fastq
../skbio/io/format/tests/data/misc_dna_as_sanger.fastq
../skbio/io/format/tests/data/misc_dna_original_sanger.fastq
../skbio/io/format/tests/data/misc_rna_as_illumina.fastq
../skbio/io/format/tests/data/misc_rna_as_sanger.fastq
../skbio/io/format/tests/data/misc_rna_original_sanger.fastq
../skbio/io/format/tests/data/ordination_error1
../skbio/io/format/tests/data/ordination_error10
../skbio/io/format/tests/data/ordination_error11
../skbio/io/format/tests/data/ordination_error12
../skbio/io/format/tests/data/ordination_error13
../skbio/io/format/tests/data/ordination_error14
../skbio/io/format/tests/data/ordination_error15
../skbio/io/format/tests/data/ordination_error16
../skbio/io/format/tests/data/ordination_error17
../skbio/io/format/tests/data/ordination_error18
../skbio/io/format/tests/data/ordination_error19
../skbio/io/format/tests/data/ordination_error2
../skbio/io/format/tests/data/ordination_error20
../skbio/io/format/tests/data/ordination_error21
../skbio/io/format/tests/data/ordination_error22
../skbio/io/format/tests/data/ordination_error23
../skbio/io/format/tests/data/ordination_error24
../skbio/io/format/tests/data/ordination_error3
../skbio/io/format/tests/data/ordination_error4
../skbio/io/format/tests/data/ordination_error5
../skbio/io/format/tests/data/ordination_error6
../skbio/io/format/tests/data/ordination_error7
../skbio/io/format/tests/data/ordination_error8
../skbio/io/format/tests/data/ordination_error9
../skbio/io/format/tests/data/ordination_example2_scores
../skbio/io/format/tests/data/ordination_example3_scores
../skbio/io/format/tests/data/ordination_exp_Ordination_CCA_site
../skbio/io/format/tests/data/ordination_exp_Ordination_CCA_site_constraints
../skbio/io/format/tests/data/ordination_exp_Ordination_CCA_species
../skbio/io/format/tests/data/ordination_exp_Ordination_PCoA_site
../skbio/io/format/tests/data/ordination_exp_Ordination_RDA_site
../skbio/io/format/tests/data/ordination_exp_Ordination_RDA_site_constraints
../skbio/io/format/tests/data/ordination_exp_Ordination_RDA_species
../skbio/io/format/tests/data/ordination_L&L_CA_data_scores
../skbio/io/format/tests/data/ordination_PCoA_sample_data_3_scores
../skbio/io/format/tests/data/phylip_dna_3_seqs
../skbio/io/format/tests/data/phylip_invalid_empty_line_after_header
../skbio/io/format/tests/data/phylip_invalid_empty_line_before_header
../skbio/io/format/tests/data/phylip_invalid_empty_line_between_seqs
../skbio/io/format/tests/data/phylip_invalid_header_too_long
../skbio/io/format/tests/data/phylip_invalid_header_too_short
../skbio/io/format/tests/data/phylip_invalid_no_header
../skbio/io/format/tests/data/phylip_invalid_seq_too_long
../skbio/io/format/tests/data/phylip_invalid_seq_too_short
../skbio/io/format/tests/data/phylip_invalid_too_few_seqs
../skbio/io/format/tests/data/phylip_invalid_too_many_seqs
../skbio/io/format/tests/data/phylip_invalid_zero_seq_len
../skbio/io/format/tests/data/phylip_invalid_zero_seqs
../skbio/io/format/tests/data/phylip_single_seq_long
../skbio/io/format/tests/data/phylip_single_seq_short
../skbio/io/format/tests/data/phylip_two_chunks
../skbio/io/format/tests/data/phylip_variable_length_ids
../skbio/io/format/tests/data/phylip_varied_whitespace_in_seqs
../skbio/io/format/tests/data/phylip_whitespace_in_header_1
../skbio/io/format/tests/data/phylip_whitespace_in_header_2
../skbio/io/format/tests/data/phylip_whitespace_in_header_3
../skbio/io/format/tests/data/qseq_invalid_filter
../skbio/io/format/tests/data/qseq_invalid_lane
../skbio/io/format/tests/data/qseq_invalid_read
../skbio/io/format/tests/data/qseq_invalid_tile
../skbio/io/format/tests/data/qseq_invalid_x
../skbio/io/format/tests/data/qseq_invalid_y
../skbio/io/format/tests/data/qseq_multi_seq_illumina1.3
../skbio/io/format/tests/data/qseq_single_seq_sanger
../skbio/io/format/tests/data/qual_2_seqs_defaults
../skbio/io/format/tests/data/qual_3_seqs_defaults
../skbio/io/format/tests/data/qual_3_seqs_defaults_desc_mismatch
../skbio/io/format/tests/data/qual_3_seqs_defaults_extra
../skbio/io/format/tests/data/qual_3_seqs_defaults_id_mismatch
../skbio/io/format/tests/data/qual_3_seqs_defaults_length_mismatch
../skbio/io/format/tests/data/qual_3_seqs_non_defaults
../skbio/io/format/tests/data/qual_5_blanks_start_of_file
../skbio/io/format/tests/data/qual_5_ws_lines_start_of_file
../skbio/io/format/tests/data/qual_6_blanks_start_of_file
../skbio/io/format/tests/data/qual_6_ws_lines_start_of_file
../skbio/io/format/tests/data/qual_blank_lines_between_records
../skbio/io/format/tests/data/qual_blanks_end_of_file
../skbio/io/format/tests/data/qual_description_newline_replacement_empty_str
../skbio/io/format/tests/data/qual_description_newline_replacement_multi_char
../skbio/io/format/tests/data/qual_description_newline_replacement_none
../skbio/io/format/tests/data/qual_id_whitespace_replacement_empty_str
../skbio/io/format/tests/data/qual_id_whitespace_replacement_multi_char
../skbio/io/format/tests/data/qual_id_whitespace_replacement_none
../skbio/io/format/tests/data/qual_invalid_blank_line_after_header
../skbio/io/format/tests/data/qual_invalid_blank_line_within_seq
../skbio/io/format/tests/data/qual_invalid_blank_sequence
../skbio/io/format/tests/data/qual_invalid_legacy_format
../skbio/io/format/tests/data/qual_invalid_missing_header
../skbio/io/format/tests/data/qual_invalid_missing_qual_scores_first
../skbio/io/format/tests/data/qual_invalid_missing_qual_scores_last
../skbio/io/format/tests/data/qual_invalid_missing_qual_scores_middle
../skbio/io/format/tests/data/qual_invalid_qual_scores_float
../skbio/io/format/tests/data/qual_invalid_qual_scores_negative
../skbio/io/format/tests/data/qual_invalid_qual_scores_over_255
../skbio/io/format/tests/data/qual_invalid_qual_scores_string
../skbio/io/format/tests/data/qual_invalid_whitespace_line_in_seq
../skbio/io/format/tests/data/qual_invalid_whitespace_only_sequence
../skbio/io/format/tests/data/qual_invalid_ws_line_after_header
../skbio/io/format/tests/data/qual_max_width_1
../skbio/io/format/tests/data/qual_max_width_5
../skbio/io/format/tests/data/qual_multi_seq
../skbio/io/format/tests/data/qual_multi_seq_roundtrip
../skbio/io/format/tests/data/qual_prot_seqs_odd_labels
../skbio/io/format/tests/data/qual_single_bio_seq_non_defaults
../skbio/io/format/tests/data/qual_single_dna_seq_non_defaults
../skbio/io/format/tests/data/qual_single_nuc_seq_non_defaults
../skbio/io/format/tests/data/qual_single_prot_seq_non_defaults
../skbio/io/format/tests/data/qual_single_rna_seq_non_defaults
../skbio/io/format/tests/data/qual_single_seq
../skbio/io/format/tests/data/qual_tabular_msa_different_type
../skbio/io/format/tests/data/qual_ws_lines_between_records
../skbio/io/format/tests/data/qual_ws_lines_end_of_file
../skbio/io/format/tests/data/sanger_full_range_as_illumina.fastq
../skbio/io/format/tests/data/sanger_full_range_as_sanger.fastq
../skbio/io/format/tests/data/sanger_full_range_original_sanger.fastq
../skbio/io/format/tests/data/solexa_full_range_original_solexa.fastq
../skbio/io/format/tests/data/stockholm_all_data_types
../skbio/io/format/tests/data/stockholm_blank_lines
../skbio/io/format/tests/data/stockholm_data_only
../skbio/io/format/tests/data/stockholm_different_padding
../skbio/io/format/tests/data/stockholm_differing_gc_data_length
../skbio/io/format/tests/data/stockholm_differing_gr_data_length
../skbio/io/format/tests/data/stockholm_differing_seq_lengths
../skbio/io/format/tests/data/stockholm_duplicate_gc
../skbio/io/format/tests/data/stockholm_duplicate_gr
../skbio/io/format/tests/data/stockholm_duplicate_sequence_names
../skbio/io/format/tests/data/stockholm_duplicate_tree_ids
../skbio/io/format/tests/data/stockholm_extensive
../skbio/io/format/tests/data/stockholm_extensive_mixed
../skbio/io/format/tests/data/stockholm_invalid_data_type
../skbio/io/format/tests/data/stockholm_invalid_nonexistent_gr
../skbio/io/format/tests/data/stockholm_invalid_nonexistent_gs
../skbio/io/format/tests/data/stockholm_malformed_data_line
../skbio/io/format/tests/data/stockholm_malformed_gc_line
../skbio/io/format/tests/data/stockholm_malformed_gf_line
../skbio/io/format/tests/data/stockholm_malformed_gr_line
../skbio/io/format/tests/data/stockholm_malformed_gs_line
../skbio/io/format/tests/data/stockholm_metadata_only
../skbio/io/format/tests/data/stockholm_minimal
../skbio/io/format/tests/data/stockholm_missing_footer
../skbio/io/format/tests/data/stockholm_missing_header
../skbio/io/format/tests/data/stockholm_missing_reference_items
../skbio/io/format/tests/data/stockholm_missing_rn_tag
../skbio/io/format/tests/data/stockholm_multi_line_tree_no_id
../skbio/io/format/tests/data/stockholm_multi_line_tree_with_id
../skbio/io/format/tests/data/stockholm_multiple_msa
../skbio/io/format/tests/data/stockholm_multiple_multi_line_trees
../skbio/io/format/tests/data/stockholm_multiple_references
../skbio/io/format/tests/data/stockholm_multiple_trees
../skbio/io/format/tests/data/stockholm_no_data
../skbio/io/format/tests/data/stockholm_nonstring_labels
../skbio/io/format/tests/data/stockholm_rna
../skbio/io/format/tests/data/stockholm_runon_gf_no_whitespace
../skbio/io/format/tests/data/stockholm_runon_gf_with_whitespace
../skbio/io/format/tests/data/stockholm_runon_gs_no_whitespace
../skbio/io/format/tests/data/stockholm_runon_gs_with_whitespace
../skbio/io/format/tests/data/stockholm_runon_references
../skbio/io/format/tests/data/stockholm_runon_references_mixed
../skbio/io/format/tests/data/stockholm_single_reference
../skbio/io/format/tests/data/stockholm_single_tree_with_id
../skbio/io/format/tests/data/stockholm_single_tree_without_id
../skbio/io/format/tests/data/stockholm_two_of_each_metadata
../skbio/io/format/tests/data/stockholm_whitespace_only_lines
../skbio/io/format/tests/data/tsv_10_fields
../skbio/io/format/tests/data/tsv_8_fields
../skbio/io/format/tests/data/whitespace_only
../skbio/io/format/tests/data/wrapping_as_illumina.fastq
../skbio/io/format/tests/data/wrapping_as_sanger.fastq
../skbio/io/format/tests/data/wrapping_original_sanger.fastq
../skbio/stats/tests/data/cr_data_out
../skbio/stats/tests/data/cr_data_raw
../skbio/stats/tests/data/cr_no_data_out
../skbio/stats/tests/data/cr_no_data_raw
../skbio/stats/tests/data/gr_w_msg_out
../skbio/stats/tests/data/gr_w_msg_raw
../skbio/stats/tests/data/gr_wo_msg_out
../skbio/stats/tests/data/gr_wo_msg_raw
../skbio/stats/tests/data/vr_out
../skbio/stats/tests/data/vr_raw
../skbio/stats/tests/data/vr_real_out
../skbio/stats/tests/data/vr_real_raw
../skbio/stats/distance/tests/data/bioenv_df_vegan.txt
../skbio/stats/distance/tests/data/bioenv_dm_vegan.txt
../skbio/stats/distance/tests/data/bioenv_exp_results_vegan.txt
../skbio/stats/distance/tests/data/df.txt
../skbio/stats/distance/tests/data/df_extra_column.txt
../skbio/stats/distance/tests/data/dm.txt
../skbio/stats/distance/tests/data/dm2.txt
../skbio/stats/distance/tests/data/dm3.txt
../skbio/stats/distance/tests/data/dm4.txt
../skbio/stats/distance/tests/data/dm_reordered.txt
../skbio/stats/distance/tests/data/exp_results.txt
../skbio/stats/distance/tests/data/exp_results_different_column_order.txt
../skbio/stats/distance/tests/data/exp_results_single_column.txt
../skbio/stats/distance/tests/data/mantel_env_dm_vegan.txt
../skbio/stats/distance/tests/data/mantel_veg_dm_vegan.txt
../skbio/stats/distance/tests/data/pwmantel_exp_results_all_dms.txt
../skbio/stats/distance/tests/data/pwmantel_exp_results_dm_dm2.txt
../skbio/stats/distance/tests/data/pwmantel_exp_results_duplicate_dms.txt
../skbio/stats/distance/tests/data/pwmantel_exp_results_minimal.txt
../skbio/stats/distance/tests/data/pwmantel_exp_results_minimal_with_labels.txt
../skbio/stats/distance/tests/data/pwmantel_exp_results_na_p_value.txt
../skbio/stats/distance/tests/data/pwmantel_exp_results_reordered_distance_matrices.txt
../skbio/stats/ordination/tests/data/example2_biplot_scaling1
../skbio/stats/ordination/tests/data/example2_biplot_scaling2
../skbio/stats/ordination/tests/data/example2_sample_constraints_scaling1
../skbio/stats/ordination/tests/data/example2_sample_constraints_scaling2
../skbio/stats/ordination/tests/data/example2_site_scaling1_from_vegan
../skbio/stats/ordination/tests/data/example2_site_scaling2_from_vegan
../skbio/stats/ordination/tests/data/example2_species_scaling1_from_vegan
../skbio/stats/ordination/tests/data/example2_species_scaling2_from_vegan
../skbio/stats/ordination/tests/data/example2_X
../skbio/stats/ordination/tests/data/example2_Y
../skbio/stats/ordination/tests/data/example3_biplot_scaling1
../skbio/stats/ordination/tests/data/example3_biplot_scaling2
../skbio/stats/ordination/tests/data/example3_sample_constraints_scaling1
../skbio/stats/ordination/tests/data/example3_sample_constraints_scaling2
../skbio/stats/ordination/tests/data/example3_site_scaling1_from_vegan
../skbio/stats/ordination/tests/data/example3_site_scaling2_from_vegan
../skbio/stats/ordination/tests/data/example3_species_scaling1_from_vegan
../skbio/stats/ordination/tests/data/example3_species_scaling2_from_vegan
../skbio/stats/ordination/tests/data/example3_X
../skbio/stats/ordination/tests/data/example3_Y
../skbio/stats/ordination/tests/data/exp_PCoAEigenResults_site
../skbio/stats/ordination/tests/data/exp_PCoAzeros_site
../skbio/stats/ordination/tests/data/L&L_CA_data
../skbio/stats/ordination/tests/data/PCoA_sample_data
../skbio/stats/ordination/tests/data/PCoA_sample_data_2
../skbio/stats/ordination/tests/data/PCoA_sample_data_3
../skbio/stats/ordination/tests/data/vare_rda_biplot_from_vegan.csv
../skbio/stats/ordination/tests/data/vare_rda_constraints_from_vegan.csv
../skbio/stats/ordination/tests/data/vare_rda_eigvals_from_vegan.csv
../skbio/stats/ordination/tests/data/vare_rda_propexpl_from_vegan.csv
../skbio/stats/ordination/tests/data/vare_rda_sites_from_vegan.csv
../skbio/stats/ordination/tests/data/vare_rda_species_from_vegan.csv
../skbio/stats/ordination/tests/data/varechem.csv
../skbio/stats/ordination/tests/data/varespec.csv
../benchmarks/__pycache__/__init__.cpython-36.pyc
../benchmarks/__pycache__/benchmarks.cpython-36.pyc
../skbio/__pycache__/__init__.cpython-36.pyc
../skbio/__pycache__/_base.cpython-36.pyc
../skbio/__pycache__/test.cpython-36.pyc
../skbio/__pycache__/workflow.cpython-36.pyc
../skbio/alignment/__pycache__/__init__.cpython-36.pyc
../skbio/alignment/__pycache__/_indexing.cpython-36.pyc
../skbio/alignment/__pycache__/_pairwise.cpython-36.pyc
../skbio/alignment/__pycache__/_repr.cpython-36.pyc
../skbio/alignment/__pycache__/_tabular_msa.cpython-36.pyc
../skbio/diversity/__pycache__/__init__.cpython-36.pyc
../skbio/diversity/__pycache__/_block.cpython-36.pyc
../skbio/diversity/__pycache__/_driver.cpython-36.pyc
../skbio/diversity/__pycache__/_util.cpython-36.pyc
../skbio/io/__pycache__/__init__.cpython-36.pyc
../skbio/io/__pycache__/_exception.cpython-36.pyc
../skbio/io/__pycache__/_fileobject.cpython-36.pyc
../skbio/io/__pycache__/_iosources.cpython-36.pyc
../skbio/io/__pycache__/_warning.cpython-36.pyc
../skbio/io/__pycache__/registry.cpython-36.pyc
../skbio/io/__pycache__/util.cpython-36.pyc
../skbio/metadata/__pycache__/__init__.cpython-36.pyc
../skbio/metadata/__pycache__/_interval.cpython-36.pyc
../skbio/metadata/__pycache__/_mixin.cpython-36.pyc
../skbio/metadata/__pycache__/_repr.cpython-36.pyc
../skbio/metadata/__pycache__/_testing.cpython-36.pyc
../skbio/sequence/__pycache__/__init__.cpython-36.pyc
../skbio/sequence/__pycache__/_dna.cpython-36.pyc
../skbio/sequence/__pycache__/_genetic_code.cpython-36.pyc
../skbio/sequence/__pycache__/_grammared_sequence.cpython-36.pyc
../skbio/sequence/__pycache__/_nucleotide_mixin.cpython-36.pyc
../skbio/sequence/__pycache__/_protein.cpython-36.pyc
../skbio/sequence/__pycache__/_repr.cpython-36.pyc
../skbio/sequence/__pycache__/_rna.cpython-36.pyc
../skbio/sequence/__pycache__/_sequence.cpython-36.pyc
../skbio/sequence/__pycache__/distance.cpython-36.pyc
../skbio/stats/__pycache__/__init__.cpython-36.pyc
../skbio/stats/__pycache__/_misc.cpython-36.pyc
../skbio/stats/__pycache__/_subsample.cpython-36.pyc
../skbio/stats/__pycache__/composition.cpython-36.pyc
../skbio/stats/__pycache__/gradient.cpython-36.pyc
../skbio/stats/__pycache__/power.cpython-36.pyc
../skbio/tests/__pycache__/__init__.cpython-36.pyc
../skbio/tests/__pycache__/test_base.cpython-36.pyc
../skbio/tests/__pycache__/test_workflow.cpython-36.pyc
../skbio/tree/__pycache__/__init__.cpython-36.pyc
../skbio/tree/__pycache__/_exception.cpython-36.pyc
../skbio/tree/__pycache__/_majority_rule.cpython-36.pyc
../skbio/tree/__pycache__/_nj.cpython-36.pyc
../skbio/tree/__pycache__/_tree.cpython-36.pyc
../skbio/util/__pycache__/__init__.cpython-36.pyc
../skbio/util/__pycache__/_decorator.cpython-36.pyc
../skbio/util/__pycache__/_exception.cpython-36.pyc
../skbio/util/__pycache__/_misc.cpython-36.pyc
../skbio/util/__pycache__/_testing.cpython-36.pyc
../skbio/util/__pycache__/_warning.cpython-36.pyc
../skbio/alignment/_lib/__pycache__/__init__.cpython-36.pyc
../skbio/alignment/tests/__pycache__/__init__.cpython-36.pyc
../skbio/alignment/tests/__pycache__/test_pairwise.cpython-36.pyc
../skbio/alignment/tests/__pycache__/test_ssw.cpython-36.pyc
../skbio/alignment/tests/__pycache__/test_tabular_msa.cpython-36.pyc
../skbio/diversity/alpha/__pycache__/__init__.cpython-36.pyc
../skbio/diversity/alpha/__pycache__/_ace.cpython-36.pyc
../skbio/diversity/alpha/__pycache__/_base.cpython-36.pyc
../skbio/diversity/alpha/__pycache__/_chao1.cpython-36.pyc
../skbio/diversity/alpha/__pycache__/_faith_pd.cpython-36.pyc
../skbio/diversity/alpha/__pycache__/_gini.cpython-36.pyc
../skbio/diversity/alpha/__pycache__/_lladser.cpython-36.pyc
../skbio/diversity/beta/__pycache__/__init__.cpython-36.pyc
../skbio/diversity/beta/__pycache__/_unifrac.cpython-36.pyc
../skbio/diversity/tests/__pycache__/__init__.cpython-36.pyc
../skbio/diversity/tests/__pycache__/test_block.cpython-36.pyc
../skbio/diversity/tests/__pycache__/test_driver.cpython-36.pyc
../skbio/diversity/tests/__pycache__/test_util.cpython-36.pyc
../skbio/diversity/alpha/tests/__pycache__/__init__.cpython-36.pyc
../skbio/diversity/alpha/tests/__pycache__/test_ace.cpython-36.pyc
../skbio/diversity/alpha/tests/__pycache__/test_base.cpython-36.pyc
../skbio/diversity/alpha/tests/__pycache__/test_chao1.cpython-36.pyc
../skbio/diversity/alpha/tests/__pycache__/test_faith_pd.cpython-36.pyc
../skbio/diversity/alpha/tests/__pycache__/test_gini.cpython-36.pyc
../skbio/diversity/alpha/tests/__pycache__/test_lladser.cpython-36.pyc
../skbio/diversity/beta/tests/__pycache__/__init__.cpython-36.pyc
../skbio/diversity/beta/tests/__pycache__/test_unifrac.cpython-36.pyc
../skbio/io/format/__pycache__/__init__.cpython-36.pyc
../skbio/io/format/__pycache__/_base.cpython-36.pyc
../skbio/io/format/__pycache__/_blast.cpython-36.pyc
../skbio/io/format/__pycache__/_sequence_feature_vocabulary.cpython-36.pyc
../skbio/io/format/__pycache__/blast6.cpython-36.pyc
../skbio/io/format/__pycache__/blast7.cpython-36.pyc
../skbio/io/format/__pycache__/clustal.cpython-36.pyc
../skbio/io/format/__pycache__/embl.cpython-36.pyc
../skbio/io/format/__pycache__/emptyfile.cpython-36.pyc
../skbio/io/format/__pycache__/fasta.cpython-36.pyc
../skbio/io/format/__pycache__/fastq.cpython-36.pyc
../skbio/io/format/__pycache__/genbank.cpython-36.pyc
../skbio/io/format/__pycache__/gff3.cpython-36.pyc
../skbio/io/format/__pycache__/lsmat.cpython-36.pyc
../skbio/io/format/__pycache__/newick.cpython-36.pyc
../skbio/io/format/__pycache__/ordination.cpython-36.pyc
../skbio/io/format/__pycache__/phylip.cpython-36.pyc
../skbio/io/format/__pycache__/qseq.cpython-36.pyc
../skbio/io/format/__pycache__/stockholm.cpython-36.pyc
../skbio/io/tests/__pycache__/__init__.cpython-36.pyc
../skbio/io/tests/__pycache__/test_iosources.cpython-36.pyc
../skbio/io/tests/__pycache__/test_registry.cpython-36.pyc
../skbio/io/tests/__pycache__/test_util.cpython-36.pyc
../skbio/io/format/tests/__pycache__/__init__.cpython-36.pyc
../skbio/io/format/tests/__pycache__/test_base.cpython-36.pyc
../skbio/io/format/tests/__pycache__/test_blast6.cpython-36.pyc
../skbio/io/format/tests/__pycache__/test_blast7.cpython-36.pyc
../skbio/io/format/tests/__pycache__/test_clustal.cpython-36.pyc
../skbio/io/format/tests/__pycache__/test_embl.cpython-36.pyc
../skbio/io/format/tests/__pycache__/test_emptyfile.cpython-36.pyc
../skbio/io/format/tests/__pycache__/test_fasta.cpython-36.pyc
../skbio/io/format/tests/__pycache__/test_fastq.cpython-36.pyc
../skbio/io/format/tests/__pycache__/test_genbank.cpython-36.pyc
../skbio/io/format/tests/__pycache__/test_gff3.cpython-36.pyc
../skbio/io/format/tests/__pycache__/test_lsmat.cpython-36.pyc
../skbio/io/format/tests/__pycache__/test_newick.cpython-36.pyc
../skbio/io/format/tests/__pycache__/test_ordination.cpython-36.pyc
../skbio/io/format/tests/__pycache__/test_phylip.cpython-36.pyc
../skbio/io/format/tests/__pycache__/test_qseq.cpython-36.pyc
../skbio/io/format/tests/__pycache__/test_sequence_feature_vocabulary.cpython-36.pyc
../skbio/io/format/tests/__pycache__/test_stockholm.cpython-36.pyc
../skbio/metadata/tests/__pycache__/__init__.cpython-36.pyc
../skbio/metadata/tests/__pycache__/test_intersection.cpython-36.pyc
../skbio/metadata/tests/__pycache__/test_interval.cpython-36.pyc
../skbio/metadata/tests/__pycache__/test_mixin.cpython-36.pyc
../skbio/sequence/tests/__pycache__/__init__.cpython-36.pyc
../skbio/sequence/tests/__pycache__/test_distance.cpython-36.pyc
../skbio/sequence/tests/__pycache__/test_dna.cpython-36.pyc
../skbio/sequence/tests/__pycache__/test_genetic_code.cpython-36.pyc
../skbio/sequence/tests/__pycache__/test_grammared_sequence.cpython-36.pyc
../skbio/sequence/tests/__pycache__/test_nucleotide_sequences.cpython-36.pyc
../skbio/sequence/tests/__pycache__/test_protein.cpython-36.pyc
../skbio/sequence/tests/__pycache__/test_rna.cpython-36.pyc
../skbio/sequence/tests/__pycache__/test_sequence.cpython-36.pyc
../skbio/stats/distance/__pycache__/__init__.cpython-36.pyc
../skbio/stats/distance/__pycache__/_anosim.cpython-36.pyc
../skbio/stats/distance/__pycache__/_base.cpython-36.pyc
../skbio/stats/distance/__pycache__/_bioenv.cpython-36.pyc
../skbio/stats/distance/__pycache__/_mantel.cpython-36.pyc
../skbio/stats/distance/__pycache__/_permanova.cpython-36.pyc
../skbio/stats/evolve/__pycache__/__init__.cpython-36.pyc
../skbio/stats/evolve/__pycache__/_hommola.cpython-36.pyc
../skbio/stats/ordination/__pycache__/__init__.cpython-36.pyc
../skbio/stats/ordination/__pycache__/_canonical_correspondence_analysis.cpython-36.pyc
../skbio/stats/ordination/__pycache__/_correspondence_analysis.cpython-36.pyc
../skbio/stats/ordination/__pycache__/_ordination_results.cpython-36.pyc
../skbio/stats/ordination/__pycache__/_principal_coordinate_analysis.cpython-36.pyc
../skbio/stats/ordination/__pycache__/_redundancy_analysis.cpython-36.pyc
../skbio/stats/ordination/__pycache__/_utils.cpython-36.pyc
../skbio/stats/tests/__pycache__/__init__.cpython-36.pyc
../skbio/stats/tests/__pycache__/test_composition.cpython-36.pyc
../skbio/stats/tests/__pycache__/test_gradient.cpython-36.pyc
../skbio/stats/tests/__pycache__/test_misc.cpython-36.pyc
../skbio/stats/tests/__pycache__/test_power.cpython-36.pyc
../skbio/stats/tests/__pycache__/test_subsample.cpython-36.pyc
../skbio/stats/distance/tests/__pycache__/__init__.cpython-36.pyc
../skbio/stats/distance/tests/__pycache__/test_anosim.cpython-36.pyc
../skbio/stats/distance/tests/__pycache__/test_base.cpython-36.pyc
../skbio/stats/distance/tests/__pycache__/test_bioenv.cpython-36.pyc
../skbio/stats/distance/tests/__pycache__/test_mantel.cpython-36.pyc
../skbio/stats/distance/tests/__pycache__/test_permanova.cpython-36.pyc
../skbio/stats/evolve/tests/__pycache__/__init__.cpython-36.pyc
../skbio/stats/evolve/tests/__pycache__/test_hommola.cpython-36.pyc
../skbio/stats/ordination/tests/__pycache__/__init__.cpython-36.pyc
../skbio/stats/ordination/tests/__pycache__/test_canonical_correspondence_analysis.cpython-36.pyc
../skbio/stats/ordination/tests/__pycache__/test_correspondence_analysis.cpython-36.pyc
../skbio/stats/ordination/tests/__pycache__/test_ordination_results.cpython-36.pyc
../skbio/stats/ordination/tests/__pycache__/test_principal_coordinate_analysis.cpython-36.pyc
../skbio/stats/ordination/tests/__pycache__/test_redundancy_analysis.cpython-36.pyc
../skbio/stats/ordination/tests/__pycache__/test_util.cpython-36.pyc
../skbio/tree/tests/__pycache__/__init__.cpython-36.pyc
../skbio/tree/tests/__pycache__/test_majority_rule.cpython-36.pyc
../skbio/tree/tests/__pycache__/test_nj.cpython-36.pyc
../skbio/tree/tests/__pycache__/test_tree.cpython-36.pyc
../skbio/util/tests/__pycache__/__init__.cpython-36.pyc
../skbio/util/tests/__pycache__/test_decorator.cpython-36.pyc
../skbio/util/tests/__pycache__/test_misc.cpython-36.pyc
../skbio/util/tests/__pycache__/test_testing.cpython-36.pyc
../skbio/metadata/_intersection.cpython-36m-darwin.so
../skbio/stats/__subsample.cpython-36m-darwin.so
../skbio/alignment/_ssw_wrapper.cpython-36m-darwin.so
../skbio/diversity/_phylogenetic.cpython-36m-darwin.so
dependency_links.txt
PKG-INFO
requires.txt
SOURCES.txt
top_level.txt
