bin/DDSR2D
bin/FBP2D
bin/FBP3DRP
bin/GRD2D
bin/KOSMAPOSL
bin/OSMAPOSL
bin/OSSPS
bin/POSMAPOSL
bin/POSSPS
bin/SRT2D
bin/SRT2DSPECT
bin/SSRB
bin/SimSET_STIR_names.sh
bin/abs_image
bin/add_SimSET_results.sh
bin/apply_normfactors
bin/apply_normfactors3D
bin/apply_patlak_to_images
bin/attenuation_coefficients_to_projections
bin/back_project
bin/bcktest
bin/calculate_attenuation_coefficients
bin/compare_image
bin/compare_projdata
bin/compute_sqrt_Hessian_row_sum
bin/construct_randoms_from_singles
bin/conv_GATE_raw_ECAT_projdata_to_interfile
bin/conv_SimSET_projdata_to_STIR
bin/conv_SimSET_projdata_to_STIR.sh
bin/conv_gipl_to_interfile
bin/conv_interfile_to_gipl
bin/conv_to_SimSET_att_image
bin/convertSiemensInterfileToSTIR.sh
bin/convert_to_binary_image
bin/correct_projdata
bin/count
bin/create_fdef_from_listmode.sh
bin/create_multi_header
bin/create_projdata_template
bin/create_tail_mask_from_ACFs
bin/ctac_to_mu_values
bin/display_projdata
bin/do_linear_regression
bin/dumpSiemensDicomInfo.sh
bin/estimate_scatter
bin/estimate_scatter.sh
bin/estimate_triple_energy_window_scatter_sinogram
bin/extract_segments
bin/extract_single_images_from_dynamic_image
bin/extract_single_images_from_parametric_image
bin/find_ML_normfactors
bin/find_ML_normfactors3D
bin/find_ML_singles_from_delayed
bin/find_fwhm_in_image
bin/find_maxima_in_image
bin/find_normfactors_from_cylinder_data
bin/find_recovery_coefficients_in_image_quality_phantom_nema_nu4
bin/find_sum_projection_of_viewgram_and_sinogram
bin/force_view_offset_to_zero.sh
bin/forward_project
bin/fwdtest
bin/generate_image
bin/get_dynamic_images_from_parametric_images
bin/get_num_voxels.sh
bin/get_time_frame_info
bin/invert_axis
bin/list_ROI_values
bin/list_detector_and_bin_info
bin/list_image_info
bin/list_image_values
bin/list_lm_countrates
bin/list_lm_events
bin/list_lm_info
bin/list_projdata_info
bin/lm_fansums
bin/lm_to_projdata
bin/lm_to_projdata_bootstrap
bin/lm_to_projdata_with_random_rejection
bin/make_hv_from_Simset_params.sh
bin/make_parametric_image_from_components
bin/manip_image
bin/manip_projdata
bin/mult_image_parameters
bin/mult_model_with_dyn_images
bin/mult_num_photons.sh
bin/poisson_noise
bin/postfilter
bin/rebin_projdata
bin/run_SimSET.sh
bin/separate_true_from_random_scatter_for_necr
bin/shift_image
bin/shift_image_origin
bin/simulate_scatter
bin/stir_config
bin/stir_divide
bin/stir_image_to_simset_object.sh
bin/stir_list_registries
bin/stir_math
bin/stir_print_voxel_sizes.sh
bin/stir_subtract
bin/stir_timings
bin/stir_write_pgm
bin/upsample_and_fit_single_scatter
bin/warp_and_accumulate_gated_images
bin/warp_image
bin/write_patlak_matrix
bin/write_phg_image_info
bin/write_proj_matrix_by_bin
bin/write_sinogram_to_txt
bin/zeropad_planes
bin/zoom_att_image.sh
bin/zoom_image
etc/conda/activate.d/stir_activate.csh
etc/conda/activate.d/stir_activate.fish
etc/conda/activate.d/stir_activate.sh
etc/conda/deactivate.d/stir_deactivate.csh
etc/conda/deactivate.d/stir_deactivate.fish
etc/conda/deactivate.d/stir_deactivate.sh
include/STIR-6.3/stir/ArcCorrection.h
include/STIR-6.3/stir/Array.h
include/STIR-6.3/stir/Array.inl
include/STIR-6.3/stir/ArrayFilter1DUsingConvolution.h
include/STIR-6.3/stir/ArrayFilter1DUsingConvolutionSymmetricKernel.h
include/STIR-6.3/stir/ArrayFilter2DUsingConvolution.h
include/STIR-6.3/stir/ArrayFilter3DUsingConvolution.h
include/STIR-6.3/stir/ArrayFilterUsingRealDFTWithPadding.h
include/STIR-6.3/stir/ArrayFunction.h
include/STIR-6.3/stir/ArrayFunction.inl
include/STIR-6.3/stir/ArrayFunctionObject.h
include/STIR-6.3/stir/ArrayFunctionObject_1ArgumentImplementation.h
include/STIR-6.3/stir/ArrayFunctionObject_2ArgumentImplementation.h
include/STIR-6.3/stir/ArrayFwd.h
include/STIR-6.3/stir/Array_complex_numbers.h
include/STIR-6.3/stir/BasicCoordinate.h
include/STIR-6.3/stir/BasicCoordinate.inl
include/STIR-6.3/stir/Bin.h
include/STIR-6.3/stir/Bin.inl
include/STIR-6.3/stir/BoundaryConditions.h
include/STIR-6.3/stir/ByteOrder.h
include/STIR-6.3/stir/ByteOrder.inl
include/STIR-6.3/stir/ByteOrderDefine.h
include/STIR-6.3/stir/CPUTimer.h
include/STIR-6.3/stir/CPUTimer.inl
include/STIR-6.3/stir/CartesianCoordinate2D.h
include/STIR-6.3/stir/CartesianCoordinate2D.inl
include/STIR-6.3/stir/CartesianCoordinate3D.h
include/STIR-6.3/stir/CartesianCoordinate3D.inl
include/STIR-6.3/stir/ChainedDataProcessor.h
include/STIR-6.3/stir/Coordinate2D.h
include/STIR-6.3/stir/Coordinate2D.inl
include/STIR-6.3/stir/Coordinate3D.h
include/STIR-6.3/stir/Coordinate3D.inl
include/STIR-6.3/stir/Coordinate4D.h
include/STIR-6.3/stir/Coordinate4D.inl
include/STIR-6.3/stir/DataProcessor.h
include/STIR-6.3/stir/DataProcessor.inl
include/STIR-6.3/stir/DataSymmetriesForViewSegmentNumbers.h
include/STIR-6.3/stir/Densel.h
include/STIR-6.3/stir/DetectionPosition.h
include/STIR-6.3/stir/DetectionPosition.inl
include/STIR-6.3/stir/DetectionPositionPair.h
include/STIR-6.3/stir/DetectionPositionPair.inl
include/STIR-6.3/stir/DetectorCoordinateMap.h
include/STIR-6.3/stir/DiscretisedDensity.h
include/STIR-6.3/stir/DiscretisedDensity.inl
include/STIR-6.3/stir/DiscretisedDensityOnCartesianGrid.h
include/STIR-6.3/stir/DiscretisedDensityOnCartesianGrid.inl
include/STIR-6.3/stir/DynamicDiscretisedDensity.h
include/STIR-6.3/stir/DynamicDiscretisedDensity.inl
include/STIR-6.3/stir/DynamicProjData.h
include/STIR-6.3/stir/ExamData.h
include/STIR-6.3/stir/ExamInfo.h
include/STIR-6.3/stir/ExamInfo.inl
include/STIR-6.3/stir/FactoryRegistry.h
include/STIR-6.3/stir/FactoryRegistry.inl
include/STIR-6.3/stir/FilePath.h
include/STIR-6.3/stir/FilePath.inl
include/STIR-6.3/stir/FullArrayIterator.h
include/STIR-6.3/stir/FullArrayIterator.inl
include/STIR-6.3/stir/GammaArrayFilter2D.h
include/STIR-6.3/stir/GammaImageFilter2D.h
include/STIR-6.3/stir/GatedDiscretisedDensity.h
include/STIR-6.3/stir/GatedProjData.h
include/STIR-6.3/stir/GeneralisedPoissonNoiseGenerator.h
include/STIR-6.3/stir/GeometryBlocksOnCylindrical.h
include/STIR-6.3/stir/HUToMuImageProcessor.h
include/STIR-6.3/stir/HighResWallClockTimer.h
include/STIR-6.3/stir/HigherPrecision.h
include/STIR-6.3/stir/IO/ECAT6ImageInputFileFormat.h
include/STIR-6.3/stir/IO/ECAT6OutputFileFormat.h
include/STIR-6.3/stir/IO/ECAT7DynamicDiscretisedDensityInputFileFormat.h
include/STIR-6.3/stir/IO/ECAT7DynamicDiscretisedDensityOutputFileFormat.h
include/STIR-6.3/stir/IO/ECAT7ImageInputFileFormat.h
include/STIR-6.3/stir/IO/ECAT7OutputFileFormat.h
include/STIR-6.3/stir/IO/ECAT7ParametricDensityOutputFileFormat.h
include/STIR-6.3/stir/IO/ECAT8_32bitListmodeInputFileFormat.h
include/STIR-6.3/stir/IO/ECAT962ListmodeInputFileFormat.h
include/STIR-6.3/stir/IO/ECAT966ListmodeInputFileFormat.h
include/STIR-6.3/stir/IO/FileSignature.h
include/STIR-6.3/stir/IO/GEHDF5ListmodeInputFileFormat.h
include/STIR-6.3/stir/IO/GEHDF5Wrapper.h
include/STIR-6.3/stir/IO/GEHDF5Wrapper.inl
include/STIR-6.3/stir/IO/GIPL_ImageFormat.h
include/STIR-6.3/stir/IO/ITKImageInputFileFormat.h
include/STIR-6.3/stir/IO/ITKOutputFileFormat.h
include/STIR-6.3/stir/IO/InputFileFormat.h
include/STIR-6.3/stir/IO/InputFileFormatRegistry.h
include/STIR-6.3/stir/IO/InputFileFormatRegistry.txx
include/STIR-6.3/stir/IO/InputStreamFromROOTFile.h
include/STIR-6.3/stir/IO/InputStreamFromROOTFile.inl
include/STIR-6.3/stir/IO/InputStreamFromROOTFileForCylindricalPET.h
include/STIR-6.3/stir/IO/InputStreamFromROOTFileForCylindricalPET.inl
include/STIR-6.3/stir/IO/InputStreamFromROOTFileForECATPET.h
include/STIR-6.3/stir/IO/InputStreamFromROOTFileForECATPET.inl
include/STIR-6.3/stir/IO/InputStreamWithRecords.h
include/STIR-6.3/stir/IO/InputStreamWithRecords.inl
include/STIR-6.3/stir/IO/InputStreamWithRecordsFromHDF5.h
include/STIR-6.3/stir/IO/InputStreamWithRecordsFromHDF5.inl
include/STIR-6.3/stir/IO/InputStreamWithRecordsFromUPENN.h
include/STIR-6.3/stir/IO/InputStreamWithRecordsFromUPENN.inl
include/STIR-6.3/stir/IO/InputStreamWithRecordsFromUPENNbin.h
include/STIR-6.3/stir/IO/InputStreamWithRecordsFromUPENNbin.inl
include/STIR-6.3/stir/IO/InputStreamWithRecordsFromUPENNtxt.h
include/STIR-6.3/stir/IO/InputStreamWithRecordsFromUPENNtxt.inl
include/STIR-6.3/stir/IO/InterfileDynamicDiscretisedDensityInputFileFormat.h
include/STIR-6.3/stir/IO/InterfileDynamicDiscretisedDensityOutputFileFormat.h
include/STIR-6.3/stir/IO/InterfileHeader.h
include/STIR-6.3/stir/IO/InterfileHeaderSiemens.h
include/STIR-6.3/stir/IO/InterfileImageInputFileFormat.h
include/STIR-6.3/stir/IO/InterfileOutputFileFormat.h
include/STIR-6.3/stir/IO/InterfilePDFSHeaderSPECT.h
include/STIR-6.3/stir/IO/InterfileParametricDiscretisedDensityInputFileFormat.h
include/STIR-6.3/stir/IO/InterfileParametricDiscretisedDensityOutputFileFormat.h
include/STIR-6.3/stir/IO/MultiDynamicDiscretisedDensityInputFileFormat.h
include/STIR-6.3/stir/IO/MultiDynamicDiscretisedDensityOutputFileFormat.h
include/STIR-6.3/stir/IO/MultiParametricDiscretisedDensityInputFileFormat.h
include/STIR-6.3/stir/IO/MultiParametricDiscretisedDensityOutputFileFormat.h
include/STIR-6.3/stir/IO/OutputFileFormat.h
include/STIR-6.3/stir/IO/OutputFileFormat.txx
include/STIR-6.3/stir/IO/PENNListmodeInputFileFormat.h
include/STIR-6.3/stir/IO/ROOTListmodeInputFileFormat.h
include/STIR-6.3/stir/IO/SAFIRCListmodeInputFileFormat.h
include/STIR-6.3/stir/IO/ecat6_types.h
include/STIR-6.3/stir/IO/ecat6_utils.h
include/STIR-6.3/stir/IO/interfile.h
include/STIR-6.3/stir/IO/read_data.h
include/STIR-6.3/stir/IO/read_data.inl
include/STIR-6.3/stir/IO/read_data_1d.h
include/STIR-6.3/stir/IO/read_data_1d.inl
include/STIR-6.3/stir/IO/read_from_file.h
include/STIR-6.3/stir/IO/stir_ecat6.h
include/STIR-6.3/stir/IO/stir_ecat7.h
include/STIR-6.3/stir/IO/stir_ecat_common.h
include/STIR-6.3/stir/IO/test/test_IO.h
include/STIR-6.3/stir/IO/write_data.h
include/STIR-6.3/stir/IO/write_data.inl
include/STIR-6.3/stir/IO/write_data_1d.h
include/STIR-6.3/stir/IO/write_data_1d.inl
include/STIR-6.3/stir/IO/write_to_file.h
include/STIR-6.3/stir/ImagingModality.h
include/STIR-6.3/stir/IndexRange.h
include/STIR-6.3/stir/IndexRange.inl
include/STIR-6.3/stir/IndexRange2D.h
include/STIR-6.3/stir/IndexRange2D.inl
include/STIR-6.3/stir/IndexRange3D.h
include/STIR-6.3/stir/IndexRange3D.inl
include/STIR-6.3/stir/IndexRange4D.h
include/STIR-6.3/stir/IndexRange4D.inl
include/STIR-6.3/stir/KOSMAPOSL/KOSMAPOSLReconstruction.h
include/STIR-6.3/stir/KeyParser.h
include/STIR-6.3/stir/LORCoordinates.h
include/STIR-6.3/stir/LORCoordinates.inl
include/STIR-6.3/stir/ML_norm.h
include/STIR-6.3/stir/MaximalArrayFilter3D.h
include/STIR-6.3/stir/MaximalImageFilter3D.h
include/STIR-6.3/stir/MedianArrayFilter3D.h
include/STIR-6.3/stir/MedianImageFilter3D.h
include/STIR-6.3/stir/MinimalArrayFilter3D.h
include/STIR-6.3/stir/MinimalImageFilter3D.h
include/STIR-6.3/stir/MultipleDataSetHeader.h
include/STIR-6.3/stir/MultipleDataSetHeader.inl
include/STIR-6.3/stir/MultipleProjData.h
include/STIR-6.3/stir/NestedIterator.h
include/STIR-6.3/stir/NestedIterator.inl
include/STIR-6.3/stir/NestedIteratorHelpers.h
include/STIR-6.3/stir/NonseparableConvolutionUsingRealDFTImageFilter.h
include/STIR-6.3/stir/NumericInfo.h
include/STIR-6.3/stir/NumericType.h
include/STIR-6.3/stir/NumericType.inl
include/STIR-6.3/stir/NumericVectorWithOffset.h
include/STIR-6.3/stir/NumericVectorWithOffset.inl
include/STIR-6.3/stir/OSMAPOSL/OSMAPOSLReconstruction.h
include/STIR-6.3/stir/OSSPS/OSSPSReconstruction.h
include/STIR-6.3/stir/ParseAndCreateFrom.h
include/STIR-6.3/stir/ParseAndCreateFrom.inl
include/STIR-6.3/stir/ParseDiscretisedDensityParameters.h
include/STIR-6.3/stir/ParsingObject.h
include/STIR-6.3/stir/PatientPosition.h
include/STIR-6.3/stir/PixelsOnCartesianGrid.h
include/STIR-6.3/stir/PixelsOnCartesianGrid.inl
include/STIR-6.3/stir/PostFiltering.h
include/STIR-6.3/stir/PostFiltering.inl
include/STIR-6.3/stir/ProjData.h
include/STIR-6.3/stir/ProjData.inl
include/STIR-6.3/stir/ProjDataFromStream.h
include/STIR-6.3/stir/ProjDataFromStream.inl
include/STIR-6.3/stir/ProjDataGEHDF5.h
include/STIR-6.3/stir/ProjDataInMemory.h
include/STIR-6.3/stir/ProjDataInfo.h
include/STIR-6.3/stir/ProjDataInfo.inl
include/STIR-6.3/stir/ProjDataInfoBlocksOnCylindrical.h
include/STIR-6.3/stir/ProjDataInfoBlocksOnCylindricalNoArcCorr.h
include/STIR-6.3/stir/ProjDataInfoCylindrical.h
include/STIR-6.3/stir/ProjDataInfoCylindrical.inl
include/STIR-6.3/stir/ProjDataInfoCylindricalArcCorr.h
include/STIR-6.3/stir/ProjDataInfoCylindricalArcCorr.inl
include/STIR-6.3/stir/ProjDataInfoCylindricalNoArcCorr.h
include/STIR-6.3/stir/ProjDataInfoCylindricalNoArcCorr.inl
include/STIR-6.3/stir/ProjDataInfoGeneric.h
include/STIR-6.3/stir/ProjDataInfoGeneric.inl
include/STIR-6.3/stir/ProjDataInfoGenericNoArcCorr.h
include/STIR-6.3/stir/ProjDataInfoGenericNoArcCorr.inl
include/STIR-6.3/stir/ProjDataInfoSubsetByView.h
include/STIR-6.3/stir/ProjDataInterfile.h
include/STIR-6.3/stir/Radionuclide.h
include/STIR-6.3/stir/RadionuclideDB.h
include/STIR-6.3/stir/RegisteredObject.h
include/STIR-6.3/stir/RegisteredObject.inl
include/STIR-6.3/stir/RegisteredObjectBase.h
include/STIR-6.3/stir/RegisteredParsingObject.h
include/STIR-6.3/stir/RegisteredParsingObject.inl
include/STIR-6.3/stir/RelatedViewgrams.h
include/STIR-6.3/stir/RelatedViewgrams.inl
include/STIR-6.3/stir/RunTests.h
include/STIR-6.3/stir/SSRB.h
include/STIR-6.3/stir/Scanner.h
include/STIR-6.3/stir/Scanner.inl
include/STIR-6.3/stir/Segment.h
include/STIR-6.3/stir/Segment.inl
include/STIR-6.3/stir/SegmentBySinogram.h
include/STIR-6.3/stir/SegmentBySinogram.inl
include/STIR-6.3/stir/SegmentByView.h
include/STIR-6.3/stir/SegmentByView.inl
include/STIR-6.3/stir/SegmentIndices.h
include/STIR-6.3/stir/SegmentIndices.inl
include/STIR-6.3/stir/SeparableArrayFunctionObject.h
include/STIR-6.3/stir/SeparableCartesianMetzImageFilter.h
include/STIR-6.3/stir/SeparableConvolutionImageFilter.h
include/STIR-6.3/stir/SeparableGaussianArrayFilter.h
include/STIR-6.3/stir/SeparableGaussianImageFilter.h
include/STIR-6.3/stir/SeparableMetzArrayFilter.h
include/STIR-6.3/stir/Shape/Box3D.h
include/STIR-6.3/stir/Shape/CombinedShape3D.h
include/STIR-6.3/stir/Shape/CombinedShape3D.inl
include/STIR-6.3/stir/Shape/DiscretisedShape3D.h
include/STIR-6.3/stir/Shape/DiscretisedShape3D.inl
include/STIR-6.3/stir/Shape/Ellipsoid.h
include/STIR-6.3/stir/Shape/EllipsoidalCylinder.h
include/STIR-6.3/stir/Shape/EllipsoidalCylinder.inl
include/STIR-6.3/stir/Shape/GenerateImage.h
include/STIR-6.3/stir/Shape/Shape3D.h
include/STIR-6.3/stir/Shape/Shape3D.inl
include/STIR-6.3/stir/Shape/Shape3DWithOrientation.h
include/STIR-6.3/stir/Sinogram.h
include/STIR-6.3/stir/Sinogram.inl
include/STIR-6.3/stir/SinogramIndices.h
include/STIR-6.3/stir/SinogramIndices.inl
include/STIR-6.3/stir/StirException.h
include/STIR-6.3/stir/Succeeded.h
include/STIR-6.3/stir/TOF_conversions.h
include/STIR-6.3/stir/TextWriter.h
include/STIR-6.3/stir/ThresholdMinToSmallPositiveValueDataProcessor.h
include/STIR-6.3/stir/TimeFrameDefinitions.h
include/STIR-6.3/stir/TimeGateDefinitions.h
include/STIR-6.3/stir/TimedBlock.h
include/STIR-6.3/stir/TimedObject.h
include/STIR-6.3/stir/TimedObject.inl
include/STIR-6.3/stir/Timer.h
include/STIR-6.3/stir/Timer.inl
include/STIR-6.3/stir/TrivialDataSymmetriesForViewSegmentNumbers.h
include/STIR-6.3/stir/TrivialDataSymmetriesForViewSegmentNumbers.inl
include/STIR-6.3/stir/TruncateToCylindricalFOVImageProcessor.h
include/STIR-6.3/stir/VectorWithOffset.h
include/STIR-6.3/stir/VectorWithOffset.inl
include/STIR-6.3/stir/Verbosity.h
include/STIR-6.3/stir/ViewSegmentNumbers.h
include/STIR-6.3/stir/ViewSegmentNumbers.inl
include/STIR-6.3/stir/Viewgram.h
include/STIR-6.3/stir/Viewgram.inl
include/STIR-6.3/stir/ViewgramIndices.h
include/STIR-6.3/stir/ViewgramIndices.inl
include/STIR-6.3/stir/VoxelsOnCartesianGrid.h
include/STIR-6.3/stir/VoxelsOnCartesianGrid.inl
include/STIR-6.3/stir/WienerArrayFilter2D.h
include/STIR-6.3/stir/WienerImageFilter2D.h
include/STIR-6.3/stir/ZoomOptions.h
include/STIR-6.3/stir/analytic/DDSR2D/DDSR2DReconstruction.h
include/STIR-6.3/stir/analytic/FBP2D/FBP2DReconstruction.h
include/STIR-6.3/stir/analytic/FBP2D/RampFilter.h
include/STIR-6.3/stir/analytic/FBP3DRP/ColsherFilter.h
include/STIR-6.3/stir/analytic/FBP3DRP/FBP3DRPReconstruction.h
include/STIR-6.3/stir/analytic/GRD2D/GRD2DReconstruction.h
include/STIR-6.3/stir/analytic/SRT2D/SRT2DReconstruction.h
include/STIR-6.3/stir/analytic/SRT2DSPECT/SRT2DSPECTReconstruction.h
include/STIR-6.3/stir/array_index_functions.h
include/STIR-6.3/stir/array_index_functions.inl
include/STIR-6.3/stir/assign.h
include/STIR-6.3/stir/assign_to_subregion.h
include/STIR-6.3/stir/assign_to_subregion.inl
include/STIR-6.3/stir/centre_of_gravity.h
include/STIR-6.3/stir/common.h
include/STIR-6.3/stir/config.h
include/STIR-6.3/stir/config/gcc.h
include/STIR-6.3/stir/config/visualc.h
include/STIR-6.3/stir/convert_array.h
include/STIR-6.3/stir/convert_array.inl
include/STIR-6.3/stir/convert_range.h
include/STIR-6.3/stir/convert_range.inl
include/STIR-6.3/stir/copy_fill.h
include/STIR-6.3/stir/cross_product.h
include/STIR-6.3/stir/cuda_utilities.h
include/STIR-6.3/stir/data/SinglesRates.h
include/STIR-6.3/stir/data/SinglesRates.inl
include/STIR-6.3/stir/data/SinglesRatesForTimeFrames.h
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include/STIR-6.3/stir/data/SinglesRatesFromECAT7.h
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