bin/cluster_profiles
bin/combine_scores
bin/complex_to_anchor_graph
bin/compute_chi
bin/compute_rg
bin/compute_vr
bin/convert_spider_to_jpg
bin/create_single_particle_images
bin/cross_links_score
bin/cross_links_single_score
bin/em2d_score
bin/em2d_single_score
bin/em3d_score
bin/em3d_single_score
bin/emagefit
bin/emagefit_cluster
bin/emagefit_dock
bin/emagefit_score
bin/estimate_threshold_from_molecular_mass
bin/fg_simulation
bin/foxs
bin/idock
bin/imp_bff
bin/imp_sampcon
bin/interface_cross_links
bin/interface_rtc
bin/ligand_score
bin/ligand_score_multiple
bin/map2pca
bin/mol2pca
bin/multi_foxs
bin/multi_foxs_combination
bin/multifit
bin/nmr_rtc_score
bin/pdb_check
bin/pdb_rmf
bin/recompute_zscore
bin/resample_density
bin/rmf_display
bin/rmf_simplify
bin/rmsd_cluster
bin/rrt_ccd
bin/rrt_sample
bin/saxs_merge
bin/saxs_score
bin/simulate_density_from_pdb
bin/soap_score
bin/spb
bin/spb_analysis
bin/spb_cluster
bin/spb_density_perbead
bin/spb_test_score
bin/validate_profile
bin/view_density_header
bin/weight_profiles
include/IMP.h
include/IMP/Array.h
include/IMP/AttributeOptimizer.h
include/IMP/Configuration.h
include/IMP/ConfigurationSet.h
include/IMP/ConstVector.h
include/IMP/Constraint.h
include/IMP/CreateLogContext.h
include/IMP/Decorator.h
include/IMP/DerivativeAccumulator.h
include/IMP/Flag.h
include/IMP/FloatIndex.h
include/IMP/Index.h
include/IMP/InputAdaptor.h
include/IMP/Key.h
include/IMP/Model.h
include/IMP/ModelObject.h
include/IMP/NonCopyable.h
include/IMP/Object.h
include/IMP/Optimizer.h
include/IMP/OptimizerState.h
include/IMP/PairContainer.h
include/IMP/PairDerivativeModifier.h
include/IMP/PairModifier.h
include/IMP/PairPredicate.h
include/IMP/PairScore.h
include/IMP/Particle.h
include/IMP/Pointer.h
include/IMP/QuadContainer.h
include/IMP/QuadDerivativeModifier.h
include/IMP/QuadModifier.h
include/IMP/QuadPredicate.h
include/IMP/QuadScore.h
include/IMP/RAII.h
include/IMP/Refiner.h
include/IMP/Restraint.h
include/IMP/RestraintInfo.h
include/IMP/RestraintSet.h
include/IMP/Sampler.h
include/IMP/ScoreAccumulator.h
include/IMP/ScoreState.h
include/IMP/ScoringFunction.h
include/IMP/SetCheckState.h
include/IMP/SetLogState.h
include/IMP/Showable.h
include/IMP/SingletonContainer.h
include/IMP/SingletonDerivativeModifier.h
include/IMP/SingletonModifier.h
include/IMP/SingletonPredicate.h
include/IMP/SingletonScore.h
include/IMP/TripletContainer.h
include/IMP/TripletDerivativeModifier.h
include/IMP/TripletModifier.h
include/IMP/TripletPredicate.h
include/IMP/TripletScore.h
include/IMP/UnaryFunction.h
include/IMP/Undecorator.h
include/IMP/Value.h
include/IMP/Vector.h
include/IMP/VersionInfo.h
include/IMP/WarningContext.h
include/IMP/WeakPointer.h
include/IMP/algebra.h
include/IMP/algebra/BoundingBoxD.h
include/IMP/algebra/Cone3D.h
include/IMP/algebra/Cylinder3D.h
include/IMP/algebra/Ellipsoid3D.h
include/IMP/algebra/Gaussian3D.h
include/IMP/algebra/GeometricPrimitiveD.h
include/IMP/algebra/GridD.h
include/IMP/algebra/Line3D.h
include/IMP/algebra/LinearFit.h
include/IMP/algebra/ParabolicFit.h
include/IMP/algebra/Plane3D.h
include/IMP/algebra/ReferenceFrame3D.h
include/IMP/algebra/Reflection3D.h
include/IMP/algebra/Rotation2D.h
include/IMP/algebra/Rotation3D.h
include/IMP/algebra/Segment3D.h
include/IMP/algebra/Sphere3D.h
include/IMP/algebra/SphereD.h
include/IMP/algebra/SpherePatch3D.h
include/IMP/algebra/SphericalVector3D.h
include/IMP/algebra/Torus3D.h
include/IMP/algebra/Transformation2D.h
include/IMP/algebra/Transformation3D.h
include/IMP/algebra/Triangle3D.h
include/IMP/algebra/UnitSimplexD.h
include/IMP/algebra/Vector2D.h
include/IMP/algebra/Vector3D.h
include/IMP/algebra/VectorBaseD.h
include/IMP/algebra/VectorD.h
include/IMP/algebra/algebra_config.h
include/IMP/algebra/algebra_macros.h
include/IMP/algebra/connolly_surface.h
include/IMP/algebra/constants.h
include/IMP/algebra/distance.h
include/IMP/algebra/eigen_analysis.h
include/IMP/algebra/endian.h
include/IMP/algebra/geometric_alignment.h
include/IMP/algebra/geometric_primitive_macros.h
include/IMP/algebra/grid_embeddings.h
include/IMP/algebra/grid_indexes.h
include/IMP/algebra/grid_ranges.h
include/IMP/algebra/grid_storages.h
include/IMP/algebra/grid_utility.h
include/IMP/algebra/internal/MinimalSet.h
include/IMP/algebra/internal/ann.h
include/IMP/algebra/internal/grid_3d_impl.h
include/IMP/algebra/internal/grid_apply.h
include/IMP/algebra/internal/grid_internal.h
include/IMP/algebra/internal/grid_interpolation.h
include/IMP/algebra/internal/grid_range_d.h
include/IMP/algebra/internal/internal_vector_generators.h
include/IMP/algebra/internal/linear_knn.h
include/IMP/algebra/internal/multi_array_helpers.h
include/IMP/algebra/internal/quaternion_derivatives.h
include/IMP/algebra/internal/swig.h
include/IMP/algebra/internal/utility.h
include/IMP/algebra/internal/vector.h
include/IMP/algebra/io.h
include/IMP/algebra/python_only.h
include/IMP/algebra/shortest_segment.h
include/IMP/algebra/standard_grids.h
include/IMP/algebra/utility.h
include/IMP/algebra/vector_generators.h
include/IMP/algebra/vector_metrics.h
include/IMP/algebra/vector_search.h
include/IMP/atom.h
include/IMP/atom/AngleSingletonScore.h
include/IMP/atom/Atom.h
include/IMP/atom/BerendsenThermostatOptimizerState.h
include/IMP/atom/BondEndpointsRefiner.h
include/IMP/atom/BondPairContainer.h
include/IMP/atom/BondSingletonScore.h
include/IMP/atom/BondedPairFilter.h
include/IMP/atom/BrownianDynamics.h
include/IMP/atom/BrownianDynamicsTAMD.h
include/IMP/atom/CAAngleRestraint.h
include/IMP/atom/CADihedralRestraint.h
include/IMP/atom/CHARMMAtom.h
include/IMP/atom/CHARMMParameters.h
include/IMP/atom/CHARMMStereochemistryRestraint.h
include/IMP/atom/CenterOfMass.h
include/IMP/atom/Chain.h
include/IMP/atom/Charged.h
include/IMP/atom/Copy.h
include/IMP/atom/CoulombPairScore.h
include/IMP/atom/CoverBond.h
include/IMP/atom/Diffusion.h
include/IMP/atom/DihedralSingletonScore.h
include/IMP/atom/Domain.h
include/IMP/atom/DopePairScore.h
include/IMP/atom/EzRestraint.h
include/IMP/atom/ForceFieldParameters.h
include/IMP/atom/Fragment.h
include/IMP/atom/HelixRestraint.h
include/IMP/atom/Hierarchy.h
include/IMP/atom/ImproperSingletonScore.h
include/IMP/atom/LangevinThermostatOptimizerState.h
include/IMP/atom/LennardJones.h
include/IMP/atom/LennardJonesPairScore.h
include/IMP/atom/LennardJonesType.h
include/IMP/atom/LennardJonesTypedPairScore.h
include/IMP/atom/LoopStatisticalPairScore.h
include/IMP/atom/Mass.h
include/IMP/atom/MolecularDynamics.h
include/IMP/atom/Molecule.h
include/IMP/atom/OrientedSoapPairScore.h
include/IMP/atom/RemoveRigidMotionOptimizerState.h
include/IMP/atom/RemoveTranslationOptimizerState.h
include/IMP/atom/Representation.h
include/IMP/atom/Residue.h
include/IMP/atom/SameResiduePairFilter.h
include/IMP/atom/SecondaryStructureResidue.h
include/IMP/atom/Selection.h
include/IMP/atom/Simulator.h
include/IMP/atom/SoapPairFilter.h
include/IMP/atom/State.h
include/IMP/atom/StereochemistryPairFilter.h
include/IMP/atom/StructureSource.h
include/IMP/atom/TAMDCentroid.h
include/IMP/atom/TAMDParticle.h
include/IMP/atom/VelocityScalingOptimizerState.h
include/IMP/atom/alignment.h
include/IMP/atom/angle_decorators.h
include/IMP/atom/atom_config.h
include/IMP/atom/atom_macros.h
include/IMP/atom/bond_decorators.h
include/IMP/atom/bond_graph.h
include/IMP/atom/charmm_segment_topology.h
include/IMP/atom/charmm_topology.h
include/IMP/atom/constants.h
include/IMP/atom/dihedrals.h
include/IMP/atom/distance.h
include/IMP/atom/element.h
include/IMP/atom/estimates.h
include/IMP/atom/force_fields.h
include/IMP/atom/hierarchy_tools.h
include/IMP/atom/internal/ExcludedPair.h
include/IMP/atom/internal/Gaussian.h
include/IMP/atom/internal/SelectionPredicate.h
include/IMP/atom/internal/Sigmoid.h
include/IMP/atom/internal/bond_graph_boost_functions.h
include/IMP/atom/internal/bond_graph_functors.h
include/IMP/atom/internal/bond_helpers.h
include/IMP/atom/internal/charmm_helpers.h
include/IMP/atom/internal/mmcif.h
include/IMP/atom/internal/mol2.h
include/IMP/atom/internal/pdb.h
include/IMP/atom/internal/soap_bond_separation.h
include/IMP/atom/internal/soap_chain_separation.h
include/IMP/atom/mmcif.h
include/IMP/atom/mol2.h
include/IMP/atom/pdb.h
include/IMP/atom/protein_ligand_score.h
include/IMP/atom/python_only.h
include/IMP/atom/secondary_structure_reader.h
include/IMP/atom/smoothing_functions.h
include/IMP/base_macros.h
include/IMP/base_types.h
include/IMP/bayesianem.h
include/IMP/bayesianem/GaussianEMRestraint.h
include/IMP/bayesianem/bayesianem_config.h
include/IMP/bayesianem/utilities.h
include/IMP/benchmark.h
include/IMP/benchmark/Profiler.h
include/IMP/benchmark/benchmark_config.h
include/IMP/benchmark/benchmark_macros.h
include/IMP/benchmark/internal/control.h
include/IMP/benchmark/internal/flags.h
include/IMP/benchmark/internal/utility.h
include/IMP/benchmark/utility.h
include/IMP/bff.h
include/IMP/bff/AV.h
include/IMP/bff/AVNetworkRestraint.h
include/IMP/bff/DecayConvolution.h
include/IMP/bff/DecayCurve.h
include/IMP/bff/DecayLifetimeHandler.h
include/IMP/bff/DecayLinearization.h
include/IMP/bff/DecayModifier.h
include/IMP/bff/DecayPattern.h
include/IMP/bff/DecayPileup.h
include/IMP/bff/DecayRange.h
include/IMP/bff/DecayRoutines.h
include/IMP/bff/DecayScale.h
include/IMP/bff/DecayScore.h
include/IMP/bff/PathMap.h
include/IMP/bff/PathMapHeader.h
include/IMP/bff/PathMapTile.h
include/IMP/bff/PathMapTileEdge.h
include/IMP/bff/bff_config.h
include/IMP/bff/internal/CnPortCache.h
include/IMP/bff/internal/FPSReaderWriter.h
include/IMP/bff/internal/Functions.h
include/IMP/bff/internal/Histogram.h
include/IMP/bff/internal/InverseSampler.h
include/IMP/bff/internal/MovingAverage.h
include/IMP/bff/internal/PhotonStatistics.h
include/IMP/bff/internal/json.h
include/IMP/bff/internal/pcg_extras.h
include/IMP/bff/internal/pcg_random.h
include/IMP/bff/internal/pcg_uint128.h
include/IMP/bracket_macros.h
include/IMP/cache.h
include/IMP/cgal.h
include/IMP/cgal/cgal_config.h
include/IMP/cgal/internal/bounding_sphere.h
include/IMP/cgal/internal/knn.h
include/IMP/cgal/internal/polygons.h
include/IMP/cgal/internal/polyhedrons.h
include/IMP/cgal/internal/sphere_cover.h
include/IMP/cgal/internal/union_of_balls.h
include/IMP/check_macros.h
include/IMP/cnmultifit/AlignSymmetric.h
include/IMP/cnmultifit/CnSymmAxisDetector.h
include/IMP/cnmultifit/MolCnSymmAxisDetector.h
include/IMP/cnmultifit/cn_rmsd.h
include/IMP/cnmultifit/internal/Parameters.h
include/IMP/cnmultifit/symmetric_multifit.h
include/IMP/cnmultifit/symmetry_utils.h
include/IMP/comparison_macros.h
include/IMP/compiler_macros.h
include/IMP/constants.h
include/IMP/container.h
include/IMP/container/AllBipartitePairContainer.h
include/IMP/container/AllPairContainer.h
include/IMP/container/CloseBipartitePairContainer.h
include/IMP/container/ClosePairContainer.h
include/IMP/container/ConnectingPairContainer.h
include/IMP/container/ConsecutivePairContainer.h
include/IMP/container/DistributePairsScoreState.h
include/IMP/container/DistributeQuadsScoreState.h
include/IMP/container/DistributeSingletonsScoreState.h
include/IMP/container/DistributeTripletsScoreState.h
include/IMP/container/DynamicListPairContainer.h
include/IMP/container/DynamicListQuadContainer.h
include/IMP/container/DynamicListSingletonContainer.h
include/IMP/container/DynamicListTripletContainer.h
include/IMP/container/EventPairsOptimizerState.h
include/IMP/container/EventQuadsOptimizerState.h
include/IMP/container/EventSingletonsOptimizerState.h
include/IMP/container/EventTripletsOptimizerState.h
include/IMP/container/InContainerPairFilter.h
include/IMP/container/InContainerQuadFilter.h
include/IMP/container/InContainerSingletonFilter.h
include/IMP/container/InContainerTripletFilter.h
include/IMP/container/ListPairContainer.h
include/IMP/container/ListQuadContainer.h
include/IMP/container/ListSingletonContainer.h
include/IMP/container/ListTripletContainer.h
include/IMP/container/MinimumPairRestraint.h
include/IMP/container/MinimumPairScore.h
include/IMP/container/MinimumQuadRestraint.h
include/IMP/container/MinimumQuadScore.h
include/IMP/container/MinimumSingletonRestraint.h
include/IMP/container/MinimumSingletonScore.h
include/IMP/container/MinimumTripletRestraint.h
include/IMP/container/MinimumTripletScore.h
include/IMP/container/PairContainerSet.h
include/IMP/container/PairContainerStatistics.h
include/IMP/container/PairsConstraint.h
include/IMP/container/PairsOptimizerState.h
include/IMP/container/PairsRestraint.h
include/IMP/container/PredicatePairsRestraint.h
include/IMP/container/PredicateQuadsRestraint.h
include/IMP/container/PredicateSingletonsRestraint.h
include/IMP/container/PredicateTripletsRestraint.h
include/IMP/container/QuadContainerSet.h
include/IMP/container/QuadContainerStatistics.h
include/IMP/container/QuadsConstraint.h
include/IMP/container/QuadsOptimizerState.h
include/IMP/container/QuadsRestraint.h
include/IMP/container/SingletonContainerSet.h
include/IMP/container/SingletonContainerStatistics.h
include/IMP/container/SingletonsConstraint.h
include/IMP/container/SingletonsOptimizerState.h
include/IMP/container/SingletonsRestraint.h
include/IMP/container/TripletContainerSet.h
include/IMP/container/TripletContainerStatistics.h
include/IMP/container/TripletsConstraint.h
include/IMP/container/TripletsOptimizerState.h
include/IMP/container/TripletsRestraint.h
include/IMP/container/container_config.h
include/IMP/container/generic.h
include/IMP/container/internal/CloseBipartitePairContainer.h
include/IMP/container/internal/ClosePairContainer.h
include/IMP/container/internal/PairContainerIndex.h
include/IMP/container/internal/QuadContainerIndex.h
include/IMP/container/internal/SingletonContainerIndex.h
include/IMP/container/internal/TripletContainerIndex.h
include/IMP/container/internal/robin_map_cereal.h
include/IMP/container_base.h
include/IMP/container_macros.h
include/IMP/core.h
include/IMP/core/AngleRestraint.h
include/IMP/core/AngleTripletScore.h
include/IMP/core/BallMover.h
include/IMP/core/BoundingBox3DSingletonScore.h
include/IMP/core/BoundingSphere3DSingletonScore.h
include/IMP/core/BoxSweepClosePairsFinder.h
include/IMP/core/CentroidOfRefined.h
include/IMP/core/ChecksScoreState.h
include/IMP/core/ChildrenRefiner.h
include/IMP/core/ClosePairsFinder.h
include/IMP/core/ClosePairsPairScore.h
include/IMP/core/ClosedCubicSpline.h
include/IMP/core/ConjugateGradients.h
include/IMP/core/ConnectivityRestraint.h
include/IMP/core/ConstantRestraint.h
include/IMP/core/Cosine.h
include/IMP/core/CoverRefined.h
include/IMP/core/DataObject.h
include/IMP/core/DerivativesFromRefined.h
include/IMP/core/DerivativesToRefined.h
include/IMP/core/DiameterRestraint.h
include/IMP/core/DihedralRestraint.h
include/IMP/core/DirectionMover.h
include/IMP/core/DistancePairScore.h
include/IMP/core/DistanceRestraint.h
include/IMP/core/DistanceToSingletonScore.h
include/IMP/core/ExcludedVolumeRestraint.h
include/IMP/core/FixedRefiner.h
include/IMP/core/Gaussian.h
include/IMP/core/GenericAttributeSingletonScore.h
include/IMP/core/GridClosePairsFinder.h
include/IMP/core/Harmonic.h
include/IMP/core/HarmonicLowerBound.h
include/IMP/core/HarmonicUpperBound.h
include/IMP/core/HarmonicWell.h
include/IMP/core/Hierarchy.h
include/IMP/core/LeavesRefiner.h
include/IMP/core/Linear.h
include/IMP/core/LogNormalMover.h
include/IMP/core/MCCGSampler.h
include/IMP/core/MSConnectivityRestraint.h
include/IMP/core/MinimumRestraint.h
include/IMP/core/MonteCarlo.h
include/IMP/core/MonteCarloMover.h
include/IMP/core/MoveStatisticsScoreState.h
include/IMP/core/MultipleBinormalRestraint.h
include/IMP/core/NearestNeighborsClosePairsFinder.h
include/IMP/core/NeighborsTable.h
include/IMP/core/NormalMover.h
include/IMP/core/OpenCubicSpline.h
include/IMP/core/PairConstraint.h
include/IMP/core/PairRestraint.h
include/IMP/core/PeriodicOptimizerState.h
include/IMP/core/QuadConstraint.h
include/IMP/core/QuadRestraint.h
include/IMP/core/QuadraticClosePairsFinder.h
include/IMP/core/RefinedPairsPairScore.h
include/IMP/core/RestraintsScoringFunction.h
include/IMP/core/RigidBodyAnglePairScore.h
include/IMP/core/RigidBodyDistancePairScore.h
include/IMP/core/RigidBodyMover.h
include/IMP/core/RigidBodyTunneler.h
include/IMP/core/RigidBodyUmbrella.h
include/IMP/core/RigidClosePairsFinder.h
include/IMP/core/SerialMover.h
include/IMP/core/SingletonConstraint.h
include/IMP/core/SingletonRestraint.h
include/IMP/core/SphereDistancePairScore.h
include/IMP/core/StatisticalPairScore.h
include/IMP/core/SteepestDescent.h
include/IMP/core/SubsetMover.h
include/IMP/core/Surface.h
include/IMP/core/SurfaceDistancePairScore.h
include/IMP/core/SurfaceMover.h
include/IMP/core/SurfaceSymmetryConstraint.h
include/IMP/core/SurfaceTetheredChain.h
include/IMP/core/TableRefiner.h
include/IMP/core/Transform.h
include/IMP/core/TransformedDistancePairScore.h
include/IMP/core/TripletConstraint.h
include/IMP/core/TripletRestraint.h
include/IMP/core/TruncatedHarmonic.h
include/IMP/core/Typed.h
include/IMP/core/TypedPairScore.h
include/IMP/core/VolumeRestraint.h
include/IMP/core/WeightedDerivativesToRefined.h
include/IMP/core/WeightedSum.h
include/IMP/core/WeightedSumOfExponential.h
include/IMP/core/XYZ.h
include/IMP/core/XYZR.h
include/IMP/core/blame.h
include/IMP/core/core_config.h
include/IMP/core/direction.h
include/IMP/core/generic.h
include/IMP/core/internal/MovedSingletonContainer.h
include/IMP/core/internal/angle_helpers.h
include/IMP/core/internal/close_pairs_helpers.h
include/IMP/core/internal/container_helpers.h
include/IMP/core/internal/dihedral_helpers.h
include/IMP/core/internal/evaluate_distance_pair_score.h
include/IMP/core/internal/graph_base.h
include/IMP/core/internal/grid_close_pairs_impl.h
include/IMP/core/internal/hierarchy_helpers.h
include/IMP/core/internal/remove_pointers.h
include/IMP/core/internal/rigid_bodies.h
include/IMP/core/internal/rigid_body_tree.h
include/IMP/core/internal/sinks.h
include/IMP/core/internal/truncated_harmonic.h
include/IMP/core/internal/tunneler_helpers.h
include/IMP/core/model_statistics.h
include/IMP/core/pair_predicates.h
include/IMP/core/predicates.h
include/IMP/core/provenance.h
include/IMP/core/python_only.h
include/IMP/core/quad_predicates.h
include/IMP/core/rigid_bodies.h
include/IMP/core/rigid_body_geometries.h
include/IMP/core/singleton_predicates.h
include/IMP/core/symmetry.h
include/IMP/core/triplet_predicates.h
include/IMP/core/utility.h
include/IMP/decorator_macros.h
include/IMP/dependency_graph.h
include/IMP/deprecation.h
include/IMP/deprecation_macros.h
include/IMP/display.h
include/IMP/display/Color.h
include/IMP/display/Colored.h
include/IMP/display/FilterGeometry.h
include/IMP/display/GeometryProcessor.h
include/IMP/display/GeometrySet.h
include/IMP/display/LogOptimizerState.h
include/IMP/display/PymolWriter.h
include/IMP/display/Writer.h
include/IMP/display/declare_Geometry.h
include/IMP/display/display_config.h
include/IMP/display/display_macros.h
include/IMP/display/geometry.h
include/IMP/display/geometry_macros.h
include/IMP/display/internal/utility.h
include/IMP/display/internal/writers.h
include/IMP/display/particle_geometry.h
include/IMP/display/primitive_geometries.h
include/IMP/display/python_only.h
include/IMP/display/restraint_geometry.h
include/IMP/display/writer_macros.h
include/IMP/domino.h
include/IMP/domino/Assignment.h
include/IMP/domino/BranchAndBoundSampler.h
include/IMP/domino/DependencyScoreState.h
include/IMP/domino/DiscreteSampler.h
include/IMP/domino/DominoSampler.h
include/IMP/domino/Order.h
include/IMP/domino/Slice.h
include/IMP/domino/Subset.h
include/IMP/domino/analysis.h
include/IMP/domino/assignment_containers.h
include/IMP/domino/assignment_tables.h
include/IMP/domino/domino_config.h
include/IMP/domino/domino_macros.h
include/IMP/domino/interactive.h
include/IMP/domino/internal/inference_utility.h
include/IMP/domino/internal/maximal_cliques.h
include/IMP/domino/internal/tree_inference.h
include/IMP/domino/particle_states.h
include/IMP/domino/subset_filters.h
include/IMP/domino/subset_graphs.h
include/IMP/domino/subset_scores.h
include/IMP/domino/utility.h
include/IMP/doxygen_macros.h
include/IMP/em.h
include/IMP/em/BayesEM3D.h
include/IMP/em/CoarseCC.h
include/IMP/em/CoarseCCatIntervals.h
include/IMP/em/CoarseConvolution.h
include/IMP/em/DensityFillingRestraint.h
include/IMP/em/DensityHeader.h
include/IMP/em/DensityMap.h
include/IMP/em/EMReaderWriter.h
include/IMP/em/EnvelopeFitRestraint.h
include/IMP/em/EnvelopePenetrationRestraint.h
include/IMP/em/EnvelopeScore.h
include/IMP/em/FitRestraint.h
include/IMP/em/FitRestraintBayesEM3D.h
include/IMP/em/ImageHeader.h
include/IMP/em/KernelParameters.h
include/IMP/em/MRCReaderWriter.h
include/IMP/em/MapDistanceTransform.h
include/IMP/em/MapReaderWriter.h
include/IMP/em/PCAAligner.h
include/IMP/em/PCAFitRestraint.h
include/IMP/em/SampledDensityMap.h
include/IMP/em/SpiderHeader.h
include/IMP/em/SpiderReaderWriter.h
include/IMP/em/SurfaceShellDensityMap.h
include/IMP/em/Voxel.h
include/IMP/em/XplorReaderWriter.h
include/IMP/em/converters.h
include/IMP/em/def.h
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include/IMP/em/internal/MRCHeader.h
include/IMP/em/internal/RadiusDependentKernelParameters.h
include/IMP/em/internal/XplorHeader.h
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include/IMP/em/rigid_fitting.h
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include/IMP/em2d/CollisionCrossSection.h
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include/IMP/em2d/Em2DRestraint.h
include/IMP/em2d/FFToperations.h
include/IMP/em2d/Image.h
include/IMP/em2d/ImageReaderWriter.h
include/IMP/em2d/JPGImageReaderWriter.h
include/IMP/em2d/PCAFitRestraint.h
include/IMP/em2d/PolarResamplingParameters.h
include/IMP/em2d/ProjectionFinder.h
include/IMP/em2d/ProjectionMask.h
include/IMP/em2d/ProjectionParameters.h
include/IMP/em2d/RegistrationResult.h
include/IMP/em2d/RelativePositionMover.h
include/IMP/em2d/RigidBodiesImageFitRestraint.h
include/IMP/em2d/SpiderImageReaderWriter.h
include/IMP/em2d/TIFFImageReaderWriter.h
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include/IMP/em2d/domino_filter_tables.h
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include/IMP/em2d/em2d_config.h
include/IMP/em2d/filenames_manipulation.h
include/IMP/em2d/hierarchical_clustering.h
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include/IMP/em2d/internal/ProjectionSphere.h
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include/IMP/example/ExampleSubsetFilterTable.h
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