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include/apbs.h
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include/generic/apolparm.h
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share/apbs/docs/using/input/old/elec/ekey.rst
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share/apbs/docs/using/input/old/elec/ion.rst
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share/apbs/docs/using/input/old/elec/maxsolve.rst
share/apbs/docs/using/input/old/elec/maxvert.rst
share/apbs/docs/using/input/old/elec/mesh.rst
share/apbs/docs/using/input/old/elec/mg-auto.rst
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share/apbs/docs/using/input/old/elec/mg-manual.rst
share/apbs/docs/using/input/old/elec/mg-para.rst
share/apbs/docs/using/input/old/elec/nlev.rst
share/apbs/docs/using/input/old/elec/npbe.rst
share/apbs/docs/using/input/old/elec/nrpbe.rst
share/apbs/docs/using/input/old/elec/ntraj.rst
share/apbs/docs/using/input/old/elec/ofrac.rst
share/apbs/docs/using/input/old/elec/outdata.rst
share/apbs/docs/using/input/old/elec/pbam-auto.rst
share/apbs/docs/using/input/old/elec/pbc.rst
share/apbs/docs/using/input/old/elec/pbsam-auto.rst
share/apbs/docs/using/input/old/elec/pdie.rst
share/apbs/docs/using/input/old/elec/pdime.rst
share/apbs/docs/using/input/old/elec/press-geoflow.rst
share/apbs/docs/using/input/old/elec/pygbe.rst
share/apbs/docs/using/input/old/elec/randorient.rst
share/apbs/docs/using/input/old/elec/runname.rst
share/apbs/docs/using/input/old/elec/runtype.rst
share/apbs/docs/using/input/old/elec/salt.rst
share/apbs/docs/using/input/old/elec/sdie.rst
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share/apbs/docs/using/input/old/elec/surf.rst
share/apbs/docs/using/input/old/elec/tabi.rst
share/apbs/docs/using/input/old/elec/targetNum.rst
share/apbs/docs/using/input/old/elec/targetRes.rst
share/apbs/docs/using/input/old/elec/term.rst
share/apbs/docs/using/input/old/elec/termcombine.rst
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share/apbs/docs/using/input/old/elec/tree_n0.rst
share/apbs/docs/using/input/old/elec/tree_order.rst
share/apbs/docs/using/input/old/elec/units.rst
share/apbs/docs/using/input/old/elec/usemap.rst
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share/apbs/docs/using/input/old/elec/vdwdisp.rst
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share/apbs/docs/using/input/old/generic/bconc.rst
share/apbs/docs/using/input/old/generic/calcenergy.rst
share/apbs/docs/using/input/old/generic/calcforce.rst
share/apbs/docs/using/input/old/generic/grid.rst
share/apbs/docs/using/input/old/generic/mol.rst
share/apbs/docs/using/input/old/generic/sdens.rst
share/apbs/docs/using/input/old/generic/srad.rst
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share/apbs/docs/using/units.rst
share/apbs/examples/FKBP/1d7h-dmso-complex.pqr
share/apbs/examples/FKBP/1d7h-dmso-mol.in
share/apbs/examples/FKBP/1d7h-dmso-smol.in
share/apbs/examples/FKBP/1d7h-dmso/UHBD/1d7h-min.qcd
share/apbs/examples/FKBP/1d7h-dmso/UHBD/bindf.inp
share/apbs/examples/FKBP/1d7h-dmso/UHBD/bindf.log
share/apbs/examples/FKBP/1d7h-dmso/UHBD/bindf.oldlog
share/apbs/examples/FKBP/1d7h-dmso/UHBD/dmso-min.qcd
share/apbs/examples/FKBP/1d7h-dmso/UHBD/pqr2qcd
share/apbs/examples/FKBP/1d7h-min.pqr
share/apbs/examples/FKBP/1d7i-dss-complex.pqr
share/apbs/examples/FKBP/1d7i-dss-mol.in
share/apbs/examples/FKBP/1d7i-dss-smol.in
share/apbs/examples/FKBP/1d7i-dss/UHBD/1d7i-min.qcd
share/apbs/examples/FKBP/1d7i-dss/UHBD/bindf.inp
share/apbs/examples/FKBP/1d7i-dss/UHBD/bindf.log
share/apbs/examples/FKBP/1d7i-dss/UHBD/dss-min.qcd
share/apbs/examples/FKBP/1d7i-min.pqr
share/apbs/examples/FKBP/README.md
share/apbs/examples/FKBP/dmso-min.pqr
share/apbs/examples/FKBP/dss-min.pqr
share/apbs/examples/README.md
share/apbs/examples/actin-dimer/README.md
share/apbs/examples/actin-dimer/UHBD/aheall-atom.charmm.dat
share/apbs/examples/actin-dimer/UHBD/nuc.3-4.full.log
share/apbs/examples/actin-dimer/UHBD/nuc.3-4.inp
share/apbs/examples/actin-dimer/UHBD/prot3.pdb
share/apbs/examples/actin-dimer/UHBD/prot4.pdb
share/apbs/examples/actin-dimer/UHBD/single.inp
share/apbs/examples/actin-dimer/UHBD/srsrf.dot
share/apbs/examples/actin-dimer/apbs-mol-auto.in
share/apbs/examples/actin-dimer/apbs-mol-parallel.in
share/apbs/examples/actin-dimer/apbs-smol-auto.in
share/apbs/examples/actin-dimer/apbs-smol-parallel.in
share/apbs/examples/actin-dimer/complex.pqr
share/apbs/examples/actin-dimer/mesh.m
share/apbs/examples/actin-dimer/mol1.pqr
share/apbs/examples/actin-dimer/mol2.pqr
share/apbs/examples/alkanes/2-methylbutane.pdb
share/apbs/examples/alkanes/README.md
share/apbs/examples/alkanes/alkanes.in
share/apbs/examples/alkanes/apbs-forces.in
share/apbs/examples/alkanes/butane.pdb
share/apbs/examples/alkanes/cyclohexane.pdb
share/apbs/examples/alkanes/cyclopentane.pdb
share/apbs/examples/alkanes/ethane.pdb
share/apbs/examples/alkanes/force.result
share/apbs/examples/alkanes/hexane.pdb
share/apbs/examples/alkanes/isobutane.pdb
share/apbs/examples/alkanes/methane.pdb
share/apbs/examples/alkanes/mol.pdb
share/apbs/examples/alkanes/neopentane.pdb
share/apbs/examples/alkanes/parm.dat
share/apbs/examples/alkanes/pentane.pdb
share/apbs/examples/alkanes/propane.pdb
share/apbs/examples/bem-binding-energy/1d30.in
share/apbs/examples/bem-binding-energy/1d30_monomer1.in
share/apbs/examples/bem-binding-energy/1d30_monomer2.in
share/apbs/examples/bem-binding-energy/README.md
share/apbs/examples/bem-binding-energy/test_proteins/1d30.pqr
share/apbs/examples/bem-binding-energy/test_proteins/1d30_monomer1.pqr
share/apbs/examples/bem-binding-energy/test_proteins/1d30_monomer2.pqr
share/apbs/examples/bem-pKa/2LZT-ASH66.in
share/apbs/examples/bem-pKa/2LZT-ASP66.in
share/apbs/examples/bem-pKa/2LZT-noASH66.in
share/apbs/examples/bem-pKa/2LZT-noASP66.in
share/apbs/examples/bem-pKa/ASH66.in
share/apbs/examples/bem-pKa/ASP66.in
share/apbs/examples/bem-pKa/README.md
share/apbs/examples/bem-pKa/test_proteins/2LZT-ASH66.pqr
share/apbs/examples/bem-pKa/test_proteins/2LZT-ASP66.pqr
share/apbs/examples/bem-pKa/test_proteins/2LZT-noASH66.pqr
share/apbs/examples/bem-pKa/test_proteins/2LZT-noASP66.pqr
share/apbs/examples/bem-pKa/test_proteins/ASH66.pqr
share/apbs/examples/bem-pKa/test_proteins/ASP66.pqr
share/apbs/examples/bem/1a63_NanoShaper_SES.in
share/apbs/examples/bem/1a63_NanoShaper_Skin.in
share/apbs/examples/bem/451c_order1.in
share/apbs/examples/bem/451c_order5.in
share/apbs/examples/bem/README.md
share/apbs/examples/bem/test_proteins/1a63.pqr
share/apbs/examples/bem/test_proteins/1ajj.pqr
share/apbs/examples/bem/test_proteins/1bbl.pqr
share/apbs/examples/bem/test_proteins/451c.pqr
share/apbs/examples/bem/test_proteins/oneb.pqr
share/apbs/examples/bem/test_proteins/twob.pqr
share/apbs/examples/bem/test_proteins/twob2.pqr
share/apbs/examples/born/README.md
share/apbs/examples/born/apbs-apolar.in
share/apbs/examples/born/apbs-forces.in
share/apbs/examples/born/apbs-mol-auto.in
share/apbs/examples/born/apbs-mol-fem-extmesh.in
share/apbs/examples/born/apbs-mol-fem.in
share/apbs/examples/born/apbs-mol-parallel.in
share/apbs/examples/born/apbs-smol-auto.in
share/apbs/examples/born/apbs-smol-fem.in
share/apbs/examples/born/apbs-smol-parallel.in
share/apbs/examples/born/apolarforces
share/apbs/examples/born/ion.pqr
share/apbs/examples/born/mesh.m
share/apbs/examples/born/parm.dat
share/apbs/examples/born/pmf.dat
share/apbs/examples/born/polarforces
share/apbs/examples/geoflow/1a63.in
share/apbs/examples/geoflow/1a63.pqr
share/apbs/examples/geoflow/README.md
share/apbs/examples/geoflow/gly.pdb
share/apbs/examples/geoflow/gly.pqr
share/apbs/examples/geoflow/glycerol.in
share/apbs/examples/geoflow/imidazole.in
share/apbs/examples/geoflow/imidazole_zap.pqr
share/apbs/examples/hca-bind/README.md
share/apbs/examples/hca-bind/UHBD/bindf-nmap.err
share/apbs/examples/hca-bind/UHBD/bindf-nmap.inp
share/apbs/examples/hca-bind/UHBD/bindf-nmap.out
share/apbs/examples/hca-bind/UHBD/bindf.inp
share/apbs/examples/hca-bind/UHBD/bindf.log
share/apbs/examples/hca-bind/UHBD/bindf.out.orig
share/apbs/examples/hca-bind/UHBD/bindf1.qcd
share/apbs/examples/hca-bind/UHBD/bindf2.err
share/apbs/examples/hca-bind/UHBD/bindf2.qcd
share/apbs/examples/hca-bind/UHBD/srsrf.dot
share/apbs/examples/hca-bind/acet.pqr
share/apbs/examples/hca-bind/apbs-mol.in
share/apbs/examples/hca-bind/apbs-smol.in
share/apbs/examples/hca-bind/complex.pqr
share/apbs/examples/hca-bind/hca.pqr
share/apbs/examples/hca-bind/mesh.m
share/apbs/examples/helix/Apbs_dummy-TEMPLATE.in
share/apbs/examples/helix/Apbs_dummy.in
share/apbs/examples/helix/Apbs_solv-TEMPLATE.in
share/apbs/examples/helix/Membrane-helix-0.pqr
share/apbs/examples/helix/Membrane-helix-12.pqr
share/apbs/examples/helix/Membrane-helix-16.pqr
share/apbs/examples/helix/Membrane-helix-4.pqr
share/apbs/examples/helix/Membrane-helix-8.pqr
share/apbs/examples/helix/Run_membrane-helix.sh
share/apbs/examples/helix/draw_membrane2.c
share/apbs/examples/ion-pmf/README.md
share/apbs/examples/ion-pmf/apolarforces
share/apbs/examples/ion-pmf/complex.in
share/apbs/examples/ion-pmf/ion-pmf.in
share/apbs/examples/ion-pmf/ion-pmf.pdb
share/apbs/examples/ion-pmf/parm.dat
share/apbs/examples/ion-pmf/polarforces
share/apbs/examples/ion-pmf/runme.sh
share/apbs/examples/ion-protein/491.pqr
share/apbs/examples/ion-protein/README.md
share/apbs/examples/ion-protein/UHBD/491.pdb
share/apbs/examples/ion-protein/UHBD/small491.e2.log
share/apbs/examples/ion-protein/UHBD/small491.inp
share/apbs/examples/ion-protein/UHBD/small491.log
share/apbs/examples/ion-protein/UHBD/small491.pdb
share/apbs/examples/ion-protein/apbs-mol-pdiel12.in
share/apbs/examples/ion-protein/apbs-mol-pdiel2.in
share/apbs/examples/ion-protein/apbs-smol-pdiel12.in
share/apbs/examples/ion-protein/apbs-smol-pdiel2.in
share/apbs/examples/ion-protein/complex.pqr
share/apbs/examples/ion-protein/small491.pqr
share/apbs/examples/ionize/README.md
share/apbs/examples/ionize/UHBD/elec.dat.exam
share/apbs/examples/ionize/UHBD/elec.inp.exam
share/apbs/examples/ionize/UHBD/elec.out.orig.exam
share/apbs/examples/ionize/UHBD/elec.pdb.exam
share/apbs/examples/ionize/acetate.pqr
share/apbs/examples/ionize/acetic-acid.pqr
share/apbs/examples/ionize/apbs-mol.in
share/apbs/examples/ionize/apbs-smol.in
share/apbs/examples/ionize/proton.pqr
share/apbs/examples/misc/README.md
share/apbs/examples/misc/achbp.pqr
share/apbs/examples/misc/apbs-PDB.in
share/apbs/examples/misc/apbs.in
share/apbs/examples/misc/fas2.pqr
share/apbs/examples/misc/mache.pqr
share/apbs/examples/misc/param.dat
share/apbs/examples/pbam/1a63.in
share/apbs/examples/pbam/1a63.pqr
share/apbs/examples/pbam/README.md
share/apbs/examples/pbam/neg_1.xyz
share/apbs/examples/pbam/neg_2.xyz
share/apbs/examples/pbam/neg_3.xyz
share/apbs/examples/pbam/neg_charge.pqr
share/apbs/examples/pbam/pos_1.xyz
share/apbs/examples/pbam/pos_2.xyz
share/apbs/examples/pbam/pos_3.xyz
share/apbs/examples/pbam/pos_charge.pqr
share/apbs/examples/pbam/toy_dynamics.in
share/apbs/examples/pbam/toy_electrostatic.in
share/apbs/examples/pbam/toy_energyforce.in
share/apbs/examples/pbsam-barn_bars/barn_bars_electro.in
share/apbs/examples/pbsam-barn_bars/barnase.pqr
share/apbs/examples/pbsam-barn_bars/barstar.pqr
share/apbs/examples/pbsam-gly/README.md
share/apbs/examples/pbsam-gly/gly.pqr
share/apbs/examples/pbsam-gly/gly.vert
share/apbs/examples/pbsam-gly/gly_cg.pqr
share/apbs/examples/pbsam-gly/gly_cg2.pqr
share/apbs/examples/pbsam-gly/gly_dynamics.in
share/apbs/examples/pbsam-gly/gly_electrostatic.in
share/apbs/examples/pbsam-gly/gly_energyforce.in
share/apbs/examples/pbsam-gly/msms/gly_electrostatic.in
share/apbs/examples/pbsam-gly/msms/gly_msms.pqr
share/apbs/examples/pbsam-gly/traj_1_1.xyz
share/apbs/examples/pbsam-gly/traj_1_2.xyz
share/apbs/examples/pbsam-gly/traj_2_1.xyz
share/apbs/examples/pbsam-gly/traj_2_2.xyz
share/apbs/examples/pka-lig/README.md
share/apbs/examples/pka-lig/UHBD/README
share/apbs/examples/pka-lig/UHBD/uhbd1-apo.out
share/apbs/examples/pka-lig/UHBD/uhbd1-bin.out
share/apbs/examples/pka-lig/UHBD/uhbd1-lig.out
share/apbs/examples/pka-lig/UHBD/uhbd2-apo.out
share/apbs/examples/pka-lig/UHBD/uhbd2-bin.out
share/apbs/examples/pka-lig/UHBD/uhbd2-lig.out
share/apbs/examples/pka-lig/apbs-mol-surf.in
share/apbs/examples/pka-lig/apbs-mol-vdw.in
share/apbs/examples/pka-lig/apbs-smol-surf.in
share/apbs/examples/pka-lig/apbs-smol-vdw.in
share/apbs/examples/pka-lig/bx6_7_apo_apbs.pqr
share/apbs/examples/pka-lig/bx6_7_bin_apbs.pqr
share/apbs/examples/pka-lig/bx6_7_lig_apbs.pqr
share/apbs/examples/point-pmf/README.md
share/apbs/examples/point-pmf/apbs.in
share/apbs/examples/point-pmf/complex-0_1.in
share/apbs/examples/point-pmf/complex-0_1.pqr
share/apbs/examples/point-pmf/complex-0_2.in
share/apbs/examples/point-pmf/complex-0_2.pqr
share/apbs/examples/point-pmf/complex-0_3.in
share/apbs/examples/point-pmf/complex-0_3.pqr
share/apbs/examples/point-pmf/complex-0_4.in
share/apbs/examples/point-pmf/complex-0_4.pqr
share/apbs/examples/point-pmf/energy.dat
share/apbs/examples/point-pmf/mol0.pqr
share/apbs/examples/point-pmf/mol1.pqr
share/apbs/examples/point-pmf/mol2.pqr
share/apbs/examples/point-pmf/mol3.pqr
share/apbs/examples/point-pmf/mol4.pqr
share/apbs/examples/point-pmf/point-pmf-0.in
share/apbs/examples/point-pmf/runme.sh
share/apbs/examples/protein-rna/PDB/model_outBoxB19.pdb
share/apbs/examples/protein-rna/PDB/model_outNB.pdb
share/apbs/examples/protein-rna/PDB/model_outNpep.pdb
share/apbs/examples/protein-rna/README.md
share/apbs/examples/protein-rna/__pycache__/apbs_dx.cpython-314.pyc
share/apbs/examples/protein-rna/__pycache__/fit.cpython-314.pyc
share/apbs/examples/protein-rna/apbs_dx.py
share/apbs/examples/protein-rna/dxmath.txt
share/apbs/examples/protein-rna/fit.py
share/apbs/examples/protein-rna/model_outBoxB19.pqr
share/apbs/examples/protein-rna/model_outNB.pqr
share/apbs/examples/protein-rna/model_outNpep.pqr
share/apbs/examples/protein-rna/postprocess.sh
share/apbs/examples/protein-rna/run_apdx_files.sh
share/apbs/examples/protein-rna/template.txt
share/apbs/examples/protein-rna/test.sh
share/apbs/examples/pygbe/lys.in
share/apbs/examples/pygbe/lys/geometry/Lys1.face
share/apbs/examples/pygbe/lys/geometry/Lys1.vert
share/apbs/examples/pygbe/lys/geometry/Lys1_1.face
share/apbs/examples/pygbe/lys/geometry/Lys1_1.vert
share/apbs/examples/pygbe/lys/geometry/Lys1_2.face
share/apbs/examples/pygbe/lys/geometry/Lys1_2.vert
share/apbs/examples/pygbe/lys/geometry/Lys1_3.face
share/apbs/examples/pygbe/lys/geometry/Lys1_3.vert
share/apbs/examples/pygbe/lys/geometry/Lys1_stern.face
share/apbs/examples/pygbe/lys/geometry/Lys1_stern.vert
share/apbs/examples/pygbe/lys/lys.config
share/apbs/examples/pygbe/lys/lys.param
share/apbs/examples/pygbe/lys/lys1_charges.pqr
share/apbs/examples/run_examples.sh
share/apbs/examples/run_selected_examples.sh
share/apbs/examples/solv/README.md
share/apbs/examples/solv/UHBD/solv.dat.exam
share/apbs/examples/solv/UHBD/solv.inp.exam
share/apbs/examples/solv/UHBD/solv.out.orig.exam
share/apbs/examples/solv/apbs-mol.in
share/apbs/examples/solv/apbs-smol.in
share/apbs/examples/solv/methanol.pqr
share/apbs/examples/solv/methoxide.pqr
share/apbs/tests/README.md
share/apbs/tests/__pycache__/apbs_check_forces.cpython-314.pyc
share/apbs/tests/__pycache__/apbs_check_intermediate_energies.cpython-314.pyc
share/apbs/tests/__pycache__/apbs_check_results.cpython-314.pyc
share/apbs/tests/__pycache__/apbs_logger.cpython-314.pyc
share/apbs/tests/__pycache__/apbs_tester.cpython-314.pyc
share/apbs/tests/apbs_check_forces.py
share/apbs/tests/apbs_check_intermediate_energies.py
share/apbs/tests/apbs_check_results.py
share/apbs/tests/apbs_logger.py
share/apbs/tests/apbs_tester.py
share/apbs/tests/test_cases.cfg
