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| casePredictions | Case Predictions |
| classConfInt | Classification Confidence Intervals |
| cleanRFdata | Clean Random Forest Input Data |
| confusionMatrix | Confusion Matrix |
| exptdErrRate | Expected Error Rate |
| impHeatmap | Importance Heatmap |
| pctCorrect | Percent Correctly Classified |
| plot.rp.importance | Plot Random Forest Importance Distributions |
| plotConfMat | Plot Confusion Matrix |
| plotImpVarDist | Plot Important Variable Distribution |
| plotInbag | Plot inbag distribution |
| plotNull | Plot Random Forest Importance Null Distributions |
| plotOOBtimes | Plot Times OOB |
| plotPredictedProbs | Plot Predicted Probabilities |
| plotRFtrace | OOB Trace |
| plotVotes | Plot Vote Distribution |
| proximityPlot | Plot Random Forest Proximity Scores |
| rfPermute | Estimate Permutation p-values for Random Forest Importance Metrics |
| rfPermute.default | Estimate Permutation p-values for Random Forest Importance Metrics |
| rfPermute.formula | Estimate Permutation p-values for Random Forest Importance Metrics |
| rp.combine | Combine rfPermute Objects |
| rp.importance | Extract rfPermute Importance Scores and p-values. |
| symb.metab | Symbiodinium type metabolite profiles |