Data Enhancement and Quality Control of Marine Species Observations

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Documentation for package ‘obistools’ version 0.0.9

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obistools-package obistools: Data Enhancement and Quality Control of Marine Species Observations
abra Subset of Abra alba data from OBIS.
calculate_centroid Calculates the centroid and radius of a WKT geometry.
check_depth Check which points have potentially invalid depths.
check_eventdate Check eventDate format.
check_eventids Check if eventID and parentEventID are present, and parentEventIDs have corresponding eventIDs.
check_extension_eventids Check if all eventIDs in an extension have corresponding eventIDs in the core.
check_fields Check if the required and recommended OBIS fields are present.
check_onland Check which points are located on land.
check_outliers_dataset Check which points are spatial dataset outliers.
check_outliers_species Check which points are spatial dataset outliers.
event_fields Event Core fields.
exportTree Exports a visual representation of a tree to an HTML file.
flatten_event Flatten event records.
flatten_occurrence Flatten event and occurrence records.
hyperbenthos Hyperbenthic communities of the North Sea.
identify_map Deprecated: Identify a point on a map.
lookup_xy Lookup spatial data for a set of points.
map_fields Map column names.
match_taxa Taxon matching using WoRMS.
obistools obistools: Data Enhancement and Quality Control of Marine Species Observations
occurrence_fields Occurrence Core fields.
plot_map Plot occurrences on a map.
plot_map_leaflet Create a Leaflet map.
plot_outliers Plot spatial and environmental outliers
report Creates a basic data quality report.
report_summary Creates a summary of a data quality report.
treeStructure Generate a tree summarizing the dataset structure, based on measurement types and event remarks.