bin/AccessFold
bin/AlignmentFold
bin/AlignmentFold-smp
bin/AlignmentPartition
bin/AlignmentPartition-smp
bin/AllSub
bin/CircleCompare
bin/CycleFold
bin/DistanceMatrix
bin/DuplexFold
bin/DuplexFold-smp
bin/DynalignDotPlot
bin/EDcalculator
bin/EDcalculator-smp
bin/ETEcalculator
bin/ETEcalculator-smp
bin/EnergyPlot
bin/EnsembleEnergy
bin/Fold
bin/Fold-smp
bin/MaxExpect
bin/MaxExpect-smp
bin/NAPSS
bin/OligoWalk
bin/PARTS
bin/ProbKnot
bin/ProbKnot-smp
bin/ProbScan
bin/ProbabilityPlot
bin/ProbablePair
bin/ProbablePair-smp
bin/RemovePseudoknots
bin/RemovePseudoknots-smp
bin/Rsample
bin/Rsample-smp
bin/Shannon
bin/ShapeKnots
bin/ShapeKnots-smp
bin/StructureProb
bin/StructureProb-smp
bin/SymmetryTester
bin/TurboFold
bin/TurboFold-smp
bin/TurboHomology
bin/bifold
bin/bifold-smp
bin/bipartition
bin/bipartition-smp
bin/ct2dot
bin/design
bin/design-smp
bin/dot2ct
bin/draw
bin/dynalign
bin/dynalign-smp
bin/dynalign_ii
bin/dynalign_ii-smp
bin/efn2
bin/efn2-smp
bin/multilign
bin/multilign-smp
bin/oligoscreen
bin/oligoscreen-smp
bin/orega
bin/orega-smp
bin/partition
bin/partition-smp
bin/phmm
bin/refold
bin/scorer
bin/stochastic
bin/stochastic-smp
bin/validate
etc/conda/activate.d/rnastructure_path.sh
etc/conda/deactivate.d/rnastructure_path.sh
share/rnastructure/data_tables/DecoyFinder_Model.sklearn
share/rnastructure/data_tables/autodetect.txt
share/rnastructure/data_tables/average_ensemble_defect.model
share/rnastructure/data_tables/b-test.coaxial.dg
share/rnastructure/data_tables/b-test.coaxial.dh
share/rnastructure/data_tables/b-test.coaxstack.dg
share/rnastructure/data_tables/b-test.coaxstack.dh
share/rnastructure/data_tables/b-test.dangle.dg
share/rnastructure/data_tables/b-test.dangle.dh
share/rnastructure/data_tables/b-test.dynalignmiscloop.dg
share/rnastructure/data_tables/b-test.hexaloop.dg
share/rnastructure/data_tables/b-test.hexaloop.dh
share/rnastructure/data_tables/b-test.int11.dg
share/rnastructure/data_tables/b-test.int11.dh
share/rnastructure/data_tables/b-test.int21.dg
share/rnastructure/data_tables/b-test.int21.dh
share/rnastructure/data_tables/b-test.int22.dg
share/rnastructure/data_tables/b-test.int22.dh
share/rnastructure/data_tables/b-test.loop.dg
share/rnastructure/data_tables/b-test.miscloop.dg
share/rnastructure/data_tables/b-test.miscloop.dh
share/rnastructure/data_tables/b-test.specification.dat
share/rnastructure/data_tables/b-test.stack.dg
share/rnastructure/data_tables/b-test.stack.dh
share/rnastructure/data_tables/b-test.tloop.dg
share/rnastructure/data_tables/b-test.tloop.dh
share/rnastructure/data_tables/b-test.triloop.dg
share/rnastructure/data_tables/b-test.triloop.dh
share/rnastructure/data_tables/b-test.tstack.dg
share/rnastructure/data_tables/b-test.tstack.dh
share/rnastructure/data_tables/b-test.tstackcoax.dg
share/rnastructure/data_tables/b-test.tstackcoax.dh
share/rnastructure/data_tables/b-test.tstackh.dg
share/rnastructure/data_tables/b-test.tstackh.dh
share/rnastructure/data_tables/b-test.tstacki.dg
share/rnastructure/data_tables/b-test.tstacki.dh
share/rnastructure/data_tables/b-test.tstacki1n.dg
share/rnastructure/data_tables/b-test.tstacki1n.dh
share/rnastructure/data_tables/b-test.tstacki23.dg
share/rnastructure/data_tables/b-test.tstacki23.dh
share/rnastructure/data_tables/b-test.tstackm.dg
share/rnastructure/data_tables/b-test.tstackm.dh
share/rnastructure/data_tables/coaxial.dat
share/rnastructure/data_tables/coaxial.dh
share/rnastructure/data_tables/coaxstack.dat
share/rnastructure/data_tables/coaxstack.dh
share/rnastructure/data_tables/dangle.dat
share/rnastructure/data_tables/dangle.dh
share/rnastructure/data_tables/data_assemble_training_Multifind_predict_ensemble_z_final_svmformat.model
share/rnastructure/data_tables/deriving_msa_parameters/extract_wc_stacks.py
share/rnastructure/data_tables/deriving_msa_parameters/for_alifold.py
share/rnastructure/data_tables/deriving_msa_parameters/msa.stack.dg
share/rnastructure/data_tables/deriving_msa_parameters/print_parameters.py
share/rnastructure/data_tables/deriving_msa_parameters/rna.int11.dg
share/rnastructure/data_tables/deriving_msa_parameters/rna.stack.dg
share/rnastructure/data_tables/deriving_msa_parameters/rna.tstack.dg
share/rnastructure/data_tables/deriving_msa_parameters/wc_nc_stack_dg
share/rnastructure/data_tables/deriving_msa_parameters/wc_wc_stack_dg
share/rnastructure/data_tables/description.txt
share/rnastructure/data_tables/design.DNA.Helices.dat
share/rnastructure/data_tables/design.DNA.Loops.dat
share/rnastructure/data_tables/design.RNA.Helices.dat
share/rnastructure/data_tables/design.RNA.Loops.dat
share/rnastructure/data_tables/dists/CMCTdist.txt
share/rnastructure/data_tables/dists/DMSdist.txt
share/rnastructure/data_tables/dists/DMSdist_nt.txt
share/rnastructure/data_tables/dists/SHAPEdist.txt
share/rnastructure/data_tables/dna.coaxial.dg
share/rnastructure/data_tables/dna.coaxial.dh
share/rnastructure/data_tables/dna.coaxstack.dg
share/rnastructure/data_tables/dna.coaxstack.dh
share/rnastructure/data_tables/dna.dangle.dg
share/rnastructure/data_tables/dna.dangle.dh
share/rnastructure/data_tables/dna.dynalignmiscloop.dg
share/rnastructure/data_tables/dna.dynalignmiscloop.dh
share/rnastructure/data_tables/dna.hexaloop.dg
share/rnastructure/data_tables/dna.hexaloop.dh
share/rnastructure/data_tables/dna.int11.dg
share/rnastructure/data_tables/dna.int11.dh
share/rnastructure/data_tables/dna.int21.dg
share/rnastructure/data_tables/dna.int21.dh
share/rnastructure/data_tables/dna.int22.dg
share/rnastructure/data_tables/dna.int22.dh
share/rnastructure/data_tables/dna.loop.dg
share/rnastructure/data_tables/dna.loop.dh
share/rnastructure/data_tables/dna.miscloop.dg
share/rnastructure/data_tables/dna.miscloop.dh
share/rnastructure/data_tables/dna.specification.dat
share/rnastructure/data_tables/dna.stack.dg
share/rnastructure/data_tables/dna.stack.dh
share/rnastructure/data_tables/dna.tloop.dg
share/rnastructure/data_tables/dna.tloop.dh
share/rnastructure/data_tables/dna.triloop.dg
share/rnastructure/data_tables/dna.triloop.dh
share/rnastructure/data_tables/dna.tstack.dg
share/rnastructure/data_tables/dna.tstack.dh
share/rnastructure/data_tables/dna.tstackcoax.dg
share/rnastructure/data_tables/dna.tstackcoax.dh
share/rnastructure/data_tables/dna.tstackh.dg
share/rnastructure/data_tables/dna.tstackh.dh
share/rnastructure/data_tables/dna.tstacki.dg
share/rnastructure/data_tables/dna.tstacki.dh
share/rnastructure/data_tables/dna.tstacki1n.dg
share/rnastructure/data_tables/dna.tstacki1n.dh
share/rnastructure/data_tables/dna.tstacki23.dg
share/rnastructure/data_tables/dna.tstacki23.dh
share/rnastructure/data_tables/dna.tstackm.dg
share/rnastructure/data_tables/dna.tstackm.dh
share/rnastructure/data_tables/dnacoaxial.dat
share/rnastructure/data_tables/dnacoaxial.dh
share/rnastructure/data_tables/dnacoaxstack.dat
share/rnastructure/data_tables/dnacoaxstack.dh
share/rnastructure/data_tables/dnadangle.dat
share/rnastructure/data_tables/dnadangle.dh
share/rnastructure/data_tables/dnadynalignmiscloop.dat
share/rnastructure/data_tables/dnadynalignmiscloop.dh
share/rnastructure/data_tables/dnahexaloop.dat
share/rnastructure/data_tables/dnahexaloop.dh
share/rnastructure/data_tables/dnaint11.dat
share/rnastructure/data_tables/dnaint11.dh
share/rnastructure/data_tables/dnaint21.dat
share/rnastructure/data_tables/dnaint21.dh
share/rnastructure/data_tables/dnaint22.dat
share/rnastructure/data_tables/dnaint22.dh
share/rnastructure/data_tables/dnaloop.dat
share/rnastructure/data_tables/dnaloop.dh
share/rnastructure/data_tables/dnamiscloop.dat
share/rnastructure/data_tables/dnamiscloop.dh
share/rnastructure/data_tables/dnastack.dat
share/rnastructure/data_tables/dnastack.dh
share/rnastructure/data_tables/dnatloop.dat
share/rnastructure/data_tables/dnatloop.dh
share/rnastructure/data_tables/dnatriloop.dat
share/rnastructure/data_tables/dnatriloop.dh
share/rnastructure/data_tables/dnatstack.dat
share/rnastructure/data_tables/dnatstack.dh
share/rnastructure/data_tables/dnatstackcoax.dat
share/rnastructure/data_tables/dnatstackcoax.dh
share/rnastructure/data_tables/dnatstackh.dat
share/rnastructure/data_tables/dnatstackh.dh
share/rnastructure/data_tables/dnatstacki.dat
share/rnastructure/data_tables/dnatstacki.dh
share/rnastructure/data_tables/dnatstacki1n.dat
share/rnastructure/data_tables/dnatstacki1n.dh
share/rnastructure/data_tables/dnatstacki23.dat
share/rnastructure/data_tables/dnatstacki23.dh
share/rnastructure/data_tables/dnatstackm.dat
share/rnastructure/data_tables/dnatstackm.dh
share/rnastructure/data_tables/dynalignmiscloop.dat
share/rnastructure/data_tables/fam_hmm_pars.dat
share/rnastructure/data_tables/helix.dat
share/rnastructure/data_tables/helixdr.dat
share/rnastructure/data_tables/hexaloop.dat
share/rnastructure/data_tables/hexaloop.dh
share/rnastructure/data_tables/int11.dat
share/rnastructure/data_tables/int11.dh
share/rnastructure/data_tables/int21.dat
share/rnastructure/data_tables/int21.dh
share/rnastructure/data_tables/int22-exp.dh
share/rnastructure/data_tables/int22.dat
share/rnastructure/data_tables/int22.dh
share/rnastructure/data_tables/loop.dat
share/rnastructure/data_tables/loop.dh
share/rnastructure/data_tables/m6A.coaxial.dg
share/rnastructure/data_tables/m6A.coaxstack.dg
share/rnastructure/data_tables/m6A.dangle.dg
share/rnastructure/data_tables/m6A.hexaloop.dg
share/rnastructure/data_tables/m6A.int11.dg
share/rnastructure/data_tables/m6A.int21.dg
share/rnastructure/data_tables/m6A.int22.dg
share/rnastructure/data_tables/m6A.loop.dg
share/rnastructure/data_tables/m6A.miscloop.dg
share/rnastructure/data_tables/m6A.specification.dat
share/rnastructure/data_tables/m6A.stack.dg
share/rnastructure/data_tables/m6A.tloop.dg
share/rnastructure/data_tables/m6A.triloop.dg
share/rnastructure/data_tables/m6A.tstack.dg
share/rnastructure/data_tables/m6A.tstackcoax.dg
share/rnastructure/data_tables/m6A.tstackh.dg
share/rnastructure/data_tables/m6A.tstacki.dg
share/rnastructure/data_tables/m6A.tstacki1n.dg
share/rnastructure/data_tables/m6A.tstacki23.dg
share/rnastructure/data_tables/m6A.tstackm.dg
share/rnastructure/data_tables/miscloop.dat
share/rnastructure/data_tables/miscloop.dh
share/rnastructure/data_tables/msa.coaxial.dg
share/rnastructure/data_tables/msa.coaxstack.dg
share/rnastructure/data_tables/msa.dangle.dg
share/rnastructure/data_tables/msa.hexaloop.dg
share/rnastructure/data_tables/msa.int11.dg
share/rnastructure/data_tables/msa.int21.dg
share/rnastructure/data_tables/msa.int22.dg
share/rnastructure/data_tables/msa.loop.dg
share/rnastructure/data_tables/msa.miscloop.dg
share/rnastructure/data_tables/msa.specification.dat
share/rnastructure/data_tables/msa.stack.dg
share/rnastructure/data_tables/msa.tloop.dg
share/rnastructure/data_tables/msa.triloop.dg
share/rnastructure/data_tables/msa.tstack.dg
share/rnastructure/data_tables/msa.tstackcoax.dg
share/rnastructure/data_tables/msa.tstackh.dg
share/rnastructure/data_tables/msa.tstacki.dg
share/rnastructure/data_tables/msa.tstacki1n.dg
share/rnastructure/data_tables/msa.tstacki23.dg
share/rnastructure/data_tables/msa.tstackm.dg
share/rnastructure/data_tables/msa_for_testing/msa.coaxial.dg
share/rnastructure/data_tables/msa_for_testing/msa.coaxstack.dg
share/rnastructure/data_tables/msa_for_testing/msa.dangle.dg
share/rnastructure/data_tables/msa_for_testing/msa.int11.dg
share/rnastructure/data_tables/msa_for_testing/msa.int21.dg
share/rnastructure/data_tables/msa_for_testing/msa.int22.dg
share/rnastructure/data_tables/msa_for_testing/msa.stack.dg
share/rnastructure/data_tables/msa_for_testing/msa.tstack.dg
share/rnastructure/data_tables/msa_for_testing/msa.tstackcoax.dg
share/rnastructure/data_tables/msa_for_testing/msa.tstackh.dg
share/rnastructure/data_tables/msa_for_testing/msa.tstacki.dg
share/rnastructure/data_tables/msa_for_testing/msa.tstacki1n.dg
share/rnastructure/data_tables/msa_for_testing/msa.tstacki23.dg
share/rnastructure/data_tables/msa_for_testing/msa.tstackm.dg
share/rnastructure/data_tables/msa_v1/msa.coaxial.dg
share/rnastructure/data_tables/msa_v1/msa.coaxstack.dg
share/rnastructure/data_tables/msa_v1/msa.dangle.dg
share/rnastructure/data_tables/msa_v1/msa.hexaloop.dg
share/rnastructure/data_tables/msa_v1/msa.int11.dg
share/rnastructure/data_tables/msa_v1/msa.int21.dg
share/rnastructure/data_tables/msa_v1/msa.int22.dg
share/rnastructure/data_tables/msa_v1/msa.loop.dg
share/rnastructure/data_tables/msa_v1/msa.miscloop.dg
share/rnastructure/data_tables/msa_v1/msa.param_map.dg
share/rnastructure/data_tables/msa_v1/msa.specification.dat
share/rnastructure/data_tables/msa_v1/msa.stack.dg
share/rnastructure/data_tables/msa_v1/msa.tloop.dg
share/rnastructure/data_tables/msa_v1/msa.triloop.dg
share/rnastructure/data_tables/msa_v1/msa.tstack.dg
share/rnastructure/data_tables/msa_v1/msa.tstackcoax.dg
share/rnastructure/data_tables/msa_v1/msa.tstackh.dg
share/rnastructure/data_tables/msa_v1/msa.tstacki.dg
share/rnastructure/data_tables/msa_v1/msa.tstacki1n.dg
share/rnastructure/data_tables/msa_v1/msa.tstacki23.dg
share/rnastructure/data_tables/msa_v1/msa.tstackm.dg
share/rnastructure/data_tables/new_training_z_ave.scale.model
share/rnastructure/data_tables/new_training_z_std.scale.model
share/rnastructure/data_tables/params_with_gaps/msa.coaxial.dg
share/rnastructure/data_tables/params_with_gaps/msa.coaxstack.dg
share/rnastructure/data_tables/params_with_gaps/msa.dangle.dg
share/rnastructure/data_tables/params_with_gaps/msa.int11.dg
share/rnastructure/data_tables/params_with_gaps/msa.int21.dg
share/rnastructure/data_tables/params_with_gaps/msa.int22.dg
share/rnastructure/data_tables/params_with_gaps/msa.param_map.dg
share/rnastructure/data_tables/params_with_gaps/msa.stack.dg
share/rnastructure/data_tables/params_with_gaps/msa.tstack.dg
share/rnastructure/data_tables/params_with_gaps/msa.tstackcoax.dg
share/rnastructure/data_tables/params_with_gaps/msa.tstackh.dg
share/rnastructure/data_tables/params_with_gaps/msa.tstacki.dg
share/rnastructure/data_tables/params_with_gaps/msa.tstacki1n.dg
share/rnastructure/data_tables/params_with_gaps/msa.tstacki23.dg
share/rnastructure/data_tables/params_with_gaps/msa.tstackm.dg
share/rnastructure/data_tables/pseudconst.dat
share/rnastructure/data_tables/rna.coaxial.dg
share/rnastructure/data_tables/rna.coaxial.dh
share/rnastructure/data_tables/rna.coaxstack.dg
share/rnastructure/data_tables/rna.coaxstack.dh
share/rnastructure/data_tables/rna.cov.dg
share/rnastructure/data_tables/rna.cov.dh
share/rnastructure/data_tables/rna.dangle.dg
share/rnastructure/data_tables/rna.dangle.dh
share/rnastructure/data_tables/rna.dynalignmiscloop.dg
share/rnastructure/data_tables/rna.hexaloop.dg
share/rnastructure/data_tables/rna.hexaloop.dh
share/rnastructure/data_tables/rna.int11.dg
share/rnastructure/data_tables/rna.int11.dh
share/rnastructure/data_tables/rna.int21.dg
share/rnastructure/data_tables/rna.int21.dh
share/rnastructure/data_tables/rna.int22.dg
share/rnastructure/data_tables/rna.int22.dh
share/rnastructure/data_tables/rna.loop.dg
share/rnastructure/data_tables/rna.loop.dh
share/rnastructure/data_tables/rna.miscloop.dg
share/rnastructure/data_tables/rna.miscloop.dh
share/rnastructure/data_tables/rna.param_map.dg
share/rnastructure/data_tables/rna.specification.dat
share/rnastructure/data_tables/rna.stack.dg
share/rnastructure/data_tables/rna.stack.dh
share/rnastructure/data_tables/rna.tloop.dg
share/rnastructure/data_tables/rna.tloop.dh
share/rnastructure/data_tables/rna.triloop.dg
share/rnastructure/data_tables/rna.triloop.dh
share/rnastructure/data_tables/rna.tstack.dg
share/rnastructure/data_tables/rna.tstack.dh
share/rnastructure/data_tables/rna.tstackcoax.dg
share/rnastructure/data_tables/rna.tstackcoax.dh
share/rnastructure/data_tables/rna.tstackh.dg
share/rnastructure/data_tables/rna.tstackh.dh
share/rnastructure/data_tables/rna.tstacki.dg
share/rnastructure/data_tables/rna.tstacki.dh
share/rnastructure/data_tables/rna.tstacki1n.dg
share/rnastructure/data_tables/rna.tstacki1n.dh
share/rnastructure/data_tables/rna.tstacki23.dg
share/rnastructure/data_tables/rna.tstacki23.dh
share/rnastructure/data_tables/rna.tstackm.dg
share/rnastructure/data_tables/rna.tstackm.dh
share/rnastructure/data_tables/rna_to_msa/msa.coaxial.dg
share/rnastructure/data_tables/rna_to_msa/msa.coaxstack.dg
share/rnastructure/data_tables/rna_to_msa/msa.dangle.dg
share/rnastructure/data_tables/rna_to_msa/msa.hexaloop.dg
share/rnastructure/data_tables/rna_to_msa/msa.int11.dg
share/rnastructure/data_tables/rna_to_msa/msa.int21.dg
share/rnastructure/data_tables/rna_to_msa/msa.int22.dg
share/rnastructure/data_tables/rna_to_msa/msa.loop.dg
share/rnastructure/data_tables/rna_to_msa/msa.miscloop.dg
share/rnastructure/data_tables/rna_to_msa/msa.param_map.dg
share/rnastructure/data_tables/rna_to_msa/msa.specification.dat
share/rnastructure/data_tables/rna_to_msa/msa.stack_102.dg
share/rnastructure/data_tables/rna_to_msa/msa.stack_206.dg
share/rnastructure/data_tables/rna_to_msa/msa.stack_348.dg
share/rnastructure/data_tables/rna_to_msa/msa.tloop.dg
share/rnastructure/data_tables/rna_to_msa/msa.triloop.dg
share/rnastructure/data_tables/rna_to_msa/msa.tstack.dg
share/rnastructure/data_tables/rna_to_msa/msa.tstackcoax.dg
share/rnastructure/data_tables/rna_to_msa/msa.tstackh.dg
share/rnastructure/data_tables/rna_to_msa/msa.tstacki.dg
share/rnastructure/data_tables/rna_to_msa/msa.tstacki1n.dg
share/rnastructure/data_tables/rna_to_msa/msa.tstacki23.dg
share/rnastructure/data_tables/rna_to_msa/msa.tstackm.dg
share/rnastructure/data_tables/rsample/DMSpaired_end.txt
share/rnastructure/data_tables/rsample/DMSpaired_mid.txt
share/rnastructure/data_tables/rsample/DMSunpaired.txt
share/rnastructure/data_tables/rsample/paired_end.txt
share/rnastructure/data_tables/rsample/paired_mid.txt
share/rnastructure/data_tables/rsample/unpaired.txt
share/rnastructure/data_tables/stack.dat
share/rnastructure/data_tables/stack.dh
share/rnastructure/data_tables/stack.ds
share/rnastructure/data_tables/stackdr.dat
share/rnastructure/data_tables/stackdr.dh
share/rnastructure/data_tables/stackdr.ds
share/rnastructure/data_tables/std_ensemble_defect.model
share/rnastructure/data_tables/tloop.dat
share/rnastructure/data_tables/tloop.dh
share/rnastructure/data_tables/triloop.dat
share/rnastructure/data_tables/triloop.dh
share/rnastructure/data_tables/tstack.dat
share/rnastructure/data_tables/tstack.dh
share/rnastructure/data_tables/tstackcoax.dat
share/rnastructure/data_tables/tstackcoax.dh
share/rnastructure/data_tables/tstackh.dat
share/rnastructure/data_tables/tstackh.dh
share/rnastructure/data_tables/tstacki.dat
share/rnastructure/data_tables/tstacki.dh
share/rnastructure/data_tables/tstacki1n.dat
share/rnastructure/data_tables/tstacki1n.dh
share/rnastructure/data_tables/tstacki23.dat
share/rnastructure/data_tables/tstacki23.dh
share/rnastructure/data_tables/tstackm.dat
share/rnastructure/data_tables/tstackm.dh
