#!/usr/bin/env python2.7
import os, sys, subprocess
from collections import defaultdict
import math

i = 0
seq, res = "", ""
for line in sys.stdin.readlines():
    if line.startswith(">"): continue
    if i == 0:
        seq = line.strip()
        i += 1
    elif i == 1:
        res = line.strip()
        i += 1
    else: break

print(seq)
print(res)
if len(seq) != len(res):
    print("sequence and structure lengths are not the same!")
    sys.exit()


ref = "." * len(res)

print("Processing seq...")

os.system("echo \"%s %s %s\" | ./src/scripts/gen_latex_script.py > %s.tex" % \
          (seq, res, ref, "circular_plot"))

os.system("pdflatex circular_plot.tex")
