{% load static %} {% load custom_tags %} {% include "chlamdb/header.html" %} {% if not menu %}
{% else %}
{% endif %}
{% if menu %} {% include "chlamdb/menu.html" %} {% endif %} {% if not valid_id %} {% else %}
{% include "chlamdb/homologs.html" %}

Distribution of the homologs in the orthogroup {{og_id|safe}}

Help

Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

Download SVG

Phylogeny of {{og_id|safe}}

Download SVG Download alignment file

Phylogeny of the RefSeq best hits of {{og_id|safe}}

{% include "chlamdb/result_table.html" with results=swissprot %}

  • Number of RefSeq hits: {{n_refseq_homologs}}
{% for entry in refseq_headers %} {% endfor %} {% for values in blast_data %} {% for entry in values %} {% endfor %} {% endfor %}
{{entry}}
{{entry|safe}}

General

{% if sequence_type == "CDS" %} {% else %} {% endif %}
Source {{organism}}
Locus tag {{locus_tag}}
Feature type {{feature_type}}
Gene {{gene}}
Product {{prot}}
Location {% for pos in gene_pos %} {{pos.0}} - {{pos.1}} (strand: {{pos.2}}) {% if gene_pos|length > 1 %}
{% endif %} {% endfor %}
Length{{nucl_length}} (nucleotides) / {{length}} (amino acids){{nucl_length}} (nucleotides)
{% if sequence_type == "CDS" %}

Orthology

Orthogroup {{og_id|safe}}
Orthogroup size {{og_size}}
N. genomes {{og_num_genomes}}
{% endif %} {% if sequence_type == "CDS" %}

Actions

{% endif %}

Genomic region

{% if pfam_def|length > 0 %}

Domains

{% for val in pfam_def %} {% endfor %}
{{val.0|safe}} {{val.1}}
{% endif %} {% for result_table in result_tables%} {% if result_table|keyvalue:"table_data"|length > 0 %}

{{result_table|keyvalue:"title"}}

{% include "chlamdb/result_table.html" with results=result_table %}
{% endif %} {% endfor %}
{% if sequence_type == "CDS" %}

Protein Sequence

{{translation}}

{% endif %}

Flanking regions ( +/- flanking 50bp)

{{ seq|safe }}

{% endif %}
{% csrf_token %} {% include "chlamdb/style_menu.html" %}