{% include "chlamdb/header.html" %} {% load custom_tags %}
{% include "chlamdb/comparison_header.html" %} {% if show_results %}
Help to interpret the results

The table displays results for all {{object_name_plural}} that passed filtering (q-value<{{qval_threshold}}).

The significance of the association for each {{object_name}} is reported with (see Scoary-2 for more information):

  • Sensitivity: probability of trait being present if gene is present
  • Specificity: probability of trait being absent if gene is absent
  • p-value: p-value of Fisher's test
  • q-value: q-value of Fisher's test, i.e. the expected False Discovery Rate
  • Empirical p-value: Calculated from the best pairwise p-value 500 random permutations of the phenotype.
  • Best pairwise p-value: Best p-value obtained from pairwise comparisons to take population structure into account.
  • Worst pairwise p-value: Worst p-value obtained from pairwise comparisons to take population structure into account.
  • fq*ep: Product of Fisher's q-value with the empirical p-value.

{% include "chlamdb/result_tabs.html" %}
{% endif %}
{% include "chlamdb/style_menu.html" %}