{% include "chlamdb/comparison_header.html" %}
{% if show_results %}
{% include "chlamdb/result_tabs.html" %}
{% endif %}
Help to interpret the results
The table displays results for all {{object_name_plural}} that passed filtering (q-value<{{qval_threshold}}).
The significance of the association for each {{object_name}} is reported with (see Scoary-2 for more information):
- Sensitivity: probability of trait being present if gene is present
- Specificity: probability of trait being absent if gene is absent
- p-value: p-value of Fisher's test
- q-value: q-value of Fisher's test, i.e. the expected False Discovery Rate
- Empirical p-value: Calculated from the best pairwise p-value 500 random permutations of the phenotype.
- Best pairwise p-value: Best p-value obtained from pairwise comparisons to take population structure into account.
- Worst pairwise p-value: Worst p-value obtained from pairwise comparisons to take population structure into account.
- fq*ep: Product of Fisher's q-value with the empirical p-value.