Phenotype-Similarity Gene Network of

Phenotypic metrics

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Phenotype severity is not displayed when phenotype evaluation is binary (presence/absence).

Phenotypes similarity:

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Phenotype severity:

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Biological annotations

Genotype

All

Homo

Hetero

Hemi

Sex

All

Female

Male

Life stage

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Early: -16w, Interval: 17-48w, Late: 49w-

All

Embryo

Early

Interval

Late

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Recenter and fit the current network in view.

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Arrange modules into a grid to avoid overlap and fit on screen.

No Gene Network Found

Highlight

Markup

Human Disease

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Human Disease annotations use IMPC Disease Models. Genes associated with human diseases are highlighted with a red border.

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Search for phenotypes to highlight. Genes with matching phenotypes are highlighted with a blue border.

Centrality

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'Normalized' options divide the centrality score by the number of phenotypes observed in KO mice

Scale:

Visualization

Layout

Node repulsion

Scale:

Size & Width

Font size:

Line width:

Similarity of accessory phenotypes

Severity of target phenotype

Export

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GraphML can be used for visualization in other network analysis tools.

Documentation Contact

TSUMUGI version -

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