bin/snpEff
share/snpeff-5.0-3/scripts/1kg.sh
share/snpeff-5.0-3/scripts/annotate_demo.sh
share/snpeff-5.0-3/scripts/annotate_demo_GATK.sh
share/snpeff-5.0-3/scripts/bedEffOnePerLine.pl
share/snpeff-5.0-3/scripts/buildDbNcbi.sh
share/snpeff-5.0-3/scripts/cgShore.pl
share/snpeff-5.0-3/scripts/cgShore.sh
share/snpeff-5.0-3/scripts/countColumns.py
share/snpeff-5.0-3/scripts/db.pl
share/snpeff-5.0-3/scripts/extractSequences.pl
share/snpeff-5.0-3/scripts/fasta2tab.pl
share/snpeff-5.0-3/scripts/fastaSample.pl
share/snpeff-5.0-3/scripts/fastaSplit.pl
share/snpeff-5.0-3/scripts/fastqSplit.pl
share/snpeff-5.0-3/scripts/filterBy.py
share/snpeff-5.0-3/scripts/gffRemovePhase.pl
share/snpeff-5.0-3/scripts/gsa/bayesFactor_correction_scoreCount.r
share/snpeff-5.0-3/scripts/gsa/bayesFactor_correction_scoreCount.sh
share/snpeff-5.0-3/scripts/gsa/bayesFactor_correction_scoreCount_max10.sh
share/snpeff-5.0-3/scripts/gsa/checkGeneNames.py
share/snpeff-5.0-3/scripts/gsa/create_sets.bds
share/snpeff-5.0-3/scripts/gsa/geneSetOverlap.py
share/snpeff-5.0-3/scripts/gsa/geneSetOverlap.sort.txt
share/snpeff-5.0-3/scripts/gsa/geneSetsGtex.py
share/snpeff-5.0-3/scripts/gsa/pvalue_correction_scoreCount.r
share/snpeff-5.0-3/scripts/gsa/pvalue_correction_scoreCount.sh
share/snpeff-5.0-3/scripts/gsa/pvalue_correction_scoreCount_min10.sh
share/snpeff-5.0-3/scripts/isutf8.py
share/snpeff-5.0-3/scripts/join.pl
share/snpeff-5.0-3/scripts/joinSnpEff.pl
share/snpeff-5.0-3/scripts/make_and_commit_docs.sh
share/snpeff-5.0-3/scripts/make_dbNSFP.sh
share/snpeff-5.0-3/scripts/nextProt_filter.pl
share/snpeff-5.0-3/scripts/ped2vcf.py
share/snpeff-5.0-3/scripts/plot.pl
share/snpeff-5.0-3/scripts/plotHistogram.pl
share/snpeff-5.0-3/scripts/plotLabel.pl
share/snpeff-5.0-3/scripts/plotMA.pl
share/snpeff-5.0-3/scripts/plotQQ.pl
share/snpeff-5.0-3/scripts/plotQQsubsample.pl
share/snpeff-5.0-3/scripts/plotSmoothScatter.pl
share/snpeff-5.0-3/scripts/plotXY.pl
share/snpeff-5.0-3/scripts/queue.pl
share/snpeff-5.0-3/scripts/sam2fastq.pl
share/snpeff-5.0-3/scripts/sample.pl
share/snpeff-5.0-3/scripts/snpEff
share/snpeff-5.0-3/scripts/snpSift
share/snpeff-5.0-3/scripts/snpSift_filter_sample_to_number.pl
share/snpeff-5.0-3/scripts/sortLine.py
share/snpeff-5.0-3/scripts/splitChr.pl
share/snpeff-5.0-3/scripts/statsNum.pl
share/snpeff-5.0-3/scripts/swapCols.pl
share/snpeff-5.0-3/scripts/transpose.pl
share/snpeff-5.0-3/scripts/txt2fa.pl
share/snpeff-5.0-3/scripts/txt2vcf.py
share/snpeff-5.0-3/scripts/uniqCount.pl
share/snpeff-5.0-3/scripts/uniqCut.pl
share/snpeff-5.0-3/scripts/vcfAnnFirst.py
share/snpeff-5.0-3/scripts/vcfBareBones.pl
share/snpeff-5.0-3/scripts/vcfEffHighest.ORI.py
share/snpeff-5.0-3/scripts/vcfEffOnePerLine.pl
share/snpeff-5.0-3/scripts/vcfFilterSamples.pl
share/snpeff-5.0-3/scripts/vcfInfoOnePerLine.pl
share/snpeff-5.0-3/scripts/vcfOnlyAlts.pl
share/snpeff-5.0-3/scripts/vcfReduceGenotypes.pl
share/snpeff-5.0-3/scripts/vcfRefCorrect.py
share/snpeff-5.0-3/scripts/wigSplit.pl
share/snpeff-5.0-3/snpEff
share/snpeff-5.0-3/snpEff.config
share/snpeff-5.0-3/snpEff.jar
