Processing & Analysis of UMI-4C Contact Profiles.
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Documentation for package ‘umi4cPackage’ version 0.0.1
Help Pages
| get_param | Get params from saved var |
| get_param_list | Get params from saved var |
| gtrack.create_redb_tracks | Create a new redb for UMI-4C |
| init_params | Read params from files |
| p4cBuildRequirements | Build the required genomic datasets. |
| p4cCreate4CseqTrack | Import fastq files to a genomic track. |
| p4cDumpConfFiles | Dump config files templates. |
| p4cExportBedGraph | Export bedGraph |
| p4cIntervalsMean | Compare contacts intensities between two profiles |
| p4cLoadConfFiles | Load all the config files required for the package. |
| p4cNewProfile | Create a new p4cProfile object. |
| plot.p4cProfile | Plot 4C nearcis profile. |
| plotCompProf | Plot 4C nearcis profile. |
| plotSingleProf | Plot 4C nearcis profile. |