bin/_version.py
bin/modules/bcftools_handling.py
bin/modules/depth.py
bin/modules/ed.py
bin/modules/filter.py
bin/modules/gff3.py
bin/modules/locations.py
bin/modules/nclswrappers.py
bin/modules/parameters.py
bin/modules/parsing.py
bin/modules/plot.py
bin/modules/reporting.py
bin/modules/samtools_handling.py
bin/modules/splsda.py
bin/modules/validation.py
bin/psQTL_post
bin/psQTL_post.py
bin/psQTL_prep
bin/psQTL_prep.py
bin/psQTL_proc
bin/psQTL_proc.py
bin/tests/data/deletions.1.vcf
bin/tests/data/deletions.2.vcf
bin/tests/data/depth.1.tsv
bin/tests/data/depth.binned.1.tsv
bin/tests/data/empty.gff3
bin/tests/data/empty.vcf
bin/tests/data/exclusions.test1.bed
bin/tests/data/faulty.1.gff3
bin/tests/data/faulty.2.gff3
bin/tests/data/faulty.3.gff3
bin/tests/data/faulty.4.gff3
bin/tests/data/faulty.5.gff3
bin/tests/data/faulty.6.gff3
bin/tests/data/faulty.7.gff3
bin/tests/data/fulltest.1.gff3
bin/tests/data/fulltest.2.gff3
bin/tests/data/fulltest.depth.1.vcf
bin/tests/data/fulltest.metadata.1.tsv
bin/tests/data/fulltest.variants.1.vcf
bin/tests/data/fulltest.variants.2.vcf
bin/tests/data/genome.fasta
bin/tests/data/metadata.tsv
bin/tests/data/normal.1.gff3
bin/tests/data/normal.2.gff3
bin/tests/data/psQTL_call.alleles_ed.tsv
bin/tests/data/psQTL_call.selected.test1.tsv
bin/tests/data/psQTL_depth.BER.test1.tsv
bin/tests/data/psQTL_integrative.selected.test1.tsv
bin/tests/data/subset.metadata.1.tsv
bin/tests/ed_formula.xlsx
bin/tests/simulation/README.md
bin/tests/simulation/simulation_pipeline.py
bin/tests/test_units.py
bin/utilities/integrative_splsda.R
bin/utilities/windowed_splsda.R
