python-scripts/add_dummy_AD.py
python-scripts/annotate_maaf.py
python-scripts/combine_vcf_variants.py
python-scripts/fa2vcf.py
python-scripts/filter_short_sam_reads.py
python-scripts/fix_pilon_headers.py
python-scripts/get_genome_regions.py
python-scripts/modify_lofreq_vcf.py
python-scripts/realign_tandem_deletions.py
python-scripts/rename_vcf_chrom.py
python-scripts/rename_vcf_sample.py
python-scripts/right_align_deletions.py
python-scripts/setGT.py
python-scripts/snp-gap.py
python-scripts/vcf-extract-mixed-pos-bed.py
python-scripts/vcf-get-high-density-snp-regions.py
python-scripts/vcf-process-for-consensus.py
python-scripts/vcf_add_variant_annotations.py
site-packages/pathogen_profiler-5.1.0.dist-info/INSTALLER
site-packages/pathogen_profiler-5.1.0.dist-info/METADATA
site-packages/pathogen_profiler-5.1.0.dist-info/RECORD
site-packages/pathogen_profiler-5.1.0.dist-info/REQUESTED
site-packages/pathogen_profiler-5.1.0.dist-info/WHEEL
site-packages/pathogen_profiler-5.1.0.dist-info/direct_url.json
site-packages/pathogen_profiler-5.1.0.dist-info/licenses/LICENSE
site-packages/pathogen_profiler-5.1.0.dist-info/top_level.txt
site-packages/pathogenprofiler/__init__.py
site-packages/pathogenprofiler/bam.py
site-packages/pathogenprofiler/barcode.py
site-packages/pathogenprofiler/cli.py
site-packages/pathogenprofiler/consensus.py
site-packages/pathogenprofiler/db.py
site-packages/pathogenprofiler/drug_resistance.py
site-packages/pathogenprofiler/fasta.py
site-packages/pathogenprofiler/fastq.py
site-packages/pathogenprofiler/gff.py
site-packages/pathogenprofiler/hgvs.py
site-packages/pathogenprofiler/kmer.py
site-packages/pathogenprofiler/models.py
site-packages/pathogenprofiler/mutation_db.py
site-packages/pathogenprofiler/profiler.py
site-packages/pathogenprofiler/rules.py
site-packages/pathogenprofiler/sanity.py
site-packages/pathogenprofiler/snp_dist.py
site-packages/pathogenprofiler/taxonomy.py
site-packages/pathogenprofiler/utils.py
site-packages/pathogenprofiler/variant.py
site-packages/pathogenprofiler/variant_calling.py
site-packages/pathogenprofiler/vcf.py
