python-scripts/.paragone-post-link.sh
python-scripts/.paragone-pre-unlink.sh
python-scripts/correction_multi.jl
site-packages/paragone-1.1.3.dist-info/INSTALLER
site-packages/paragone-1.1.3.dist-info/METADATA
site-packages/paragone-1.1.3.dist-info/RECORD
site-packages/paragone-1.1.3.dist-info/REQUESTED
site-packages/paragone-1.1.3.dist-info/WHEEL
site-packages/paragone-1.1.3.dist-info/direct_url.json
site-packages/paragone-1.1.3.dist-info/entry_points.txt
site-packages/paragone-1.1.3.dist-info/licenses/LICENSE.txt
site-packages/paragone-1.1.3.dist-info/top_level.txt
site-packages/paragone/__init__.py
site-packages/paragone/align_and_clean.py
site-packages/paragone/align_selected_and_tree.py
site-packages/paragone/alignment_to_tree.py
site-packages/paragone/check_inputs.py
site-packages/paragone/cut_deep_paralogs.py
site-packages/paragone/fasta_from_tree.py
site-packages/paragone/mask_tree_tips.py
site-packages/paragone/newick3.py
site-packages/paragone/paragone_main.py
site-packages/paragone/paragone_subparsers.py
site-packages/paragone/paralogy_report.py
site-packages/paragone/phylo3.py
site-packages/paragone/prune_paralogs_mi.py
site-packages/paragone/prune_paralogs_mo.py
site-packages/paragone/prune_paralogs_rt.py
site-packages/paragone/seq.py
site-packages/paragone/strip_names_and_align.py
site-packages/paragone/tree_utils.py
site-packages/paragone/trim_trees_treeshrink.py
site-packages/paragone/utils.py
site-packages/paragone/version.py
