public class FullBEDFeature extends SimpleBEDFeature implements BEDFeature
| Modifier and Type | Class and Description |
|---|---|
class |
FullBEDFeature.Exon
A sub region of a feature.
|
class |
FullBEDFeature.Exon2 |
chr, end, start, strand| Constructor and Description |
|---|
FullBEDFeature(java.lang.String chr,
int start,
int end) |
| Modifier and Type | Method and Description |
|---|---|
void |
addExon(FullBEDFeature.Exon exon) |
void |
addExon(int exonStart,
int exonEnd,
int cdStart,
int cdEnd,
int exonNumber) |
java.util.List<FullBEDFeature.Exon> |
getExons() |
void |
setExons(java.util.List<FullBEDFeature.Exon> exons) |
getColor, getContig, getDescription, getEnd, getLink, getName, getScore, getStart, getStrand, getType, setChr, setColor, setDescription, setEnd, setLink, setName, setScore, setStart, setStrand, setTypeclone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, waitgetColor, getDescription, getLink, getName, getScore, getStrand, getTypecontains, contigsMatch, getContig, getEnd, getLengthOnReference, getStart, overlaps, withinDistanceOfpublic java.util.List<FullBEDFeature.Exon> getExons()
getExons in interface BEDFeaturegetExons in class SimpleBEDFeaturepublic void setExons(java.util.List<FullBEDFeature.Exon> exons)
public void addExon(FullBEDFeature.Exon exon)
public void addExon(int exonStart,
int exonEnd,
int cdStart,
int cdEnd,
int exonNumber)