public class SimpleBEDFeature extends java.lang.Object implements BEDFeature
| Modifier and Type | Field and Description |
|---|---|
protected java.lang.String |
chr |
protected int |
end |
protected int |
start |
protected Strand |
strand |
| Constructor and Description |
|---|
SimpleBEDFeature(int start,
int end,
java.lang.String chr) |
| Modifier and Type | Method and Description |
|---|---|
java.awt.Color |
getColor() |
java.lang.String |
getContig()
Gets the contig name for the contig this is mapped to.
|
java.lang.String |
getDescription() |
int |
getEnd() |
java.util.List<FullBEDFeature.Exon> |
getExons() |
java.lang.String |
getLink() |
java.lang.String |
getName() |
float |
getScore() |
int |
getStart() |
Strand |
getStrand() |
java.lang.String |
getType() |
void |
setChr(java.lang.String chr) |
void |
setColor(java.awt.Color color) |
void |
setDescription(java.lang.String description) |
void |
setEnd(int end) |
void |
setLink(java.lang.String link) |
void |
setName(java.lang.String name) |
void |
setScore(float score) |
void |
setStart(int start) |
void |
setStrand(Strand strand) |
void |
setType(java.lang.String type) |
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, waitcontains, contigsMatch, getLengthOnReference, overlaps, withinDistanceOfprotected java.lang.String chr
protected int start
protected int end
protected Strand strand
public SimpleBEDFeature(int start,
int end,
java.lang.String chr)
public java.lang.String getContig()
Locatablepublic int getStart()
public int getEnd()
public Strand getStrand()
getStrand in interface BEDFeaturepublic void setStrand(Strand strand)
public void setChr(java.lang.String chr)
public void setStart(int start)
public void setEnd(int end)
public java.lang.String getType()
getType in interface BEDFeaturepublic void setType(java.lang.String type)
public java.awt.Color getColor()
getColor in interface BEDFeaturepublic void setColor(java.awt.Color color)
public java.lang.String getDescription()
getDescription in interface BEDFeaturepublic void setDescription(java.lang.String description)
public java.lang.String getName()
getName in interface BEDFeaturepublic void setName(java.lang.String name)
public float getScore()
getScore in interface BEDFeaturepublic void setScore(float score)
public java.lang.String getLink()
getLink in interface BEDFeaturepublic void setLink(java.lang.String link)
public java.util.List<FullBEDFeature.Exon> getExons()
getExons in interface BEDFeature