public class TextCigarCodec
extends java.lang.Object
| Constructor and Description |
|---|
TextCigarCodec() |
| Modifier and Type | Method and Description |
|---|---|
static Cigar |
decode(java.lang.String textCigar)
Convert from String CIGAR representation to Cigar class representation.
|
static java.lang.String |
encode(Cigar cigar)
Convert from Cigar class representation to String.
|
public static java.lang.String encode(Cigar cigar)
cigar - in Cigar class formatpublic static Cigar decode(java.lang.String textCigar)
textCigar - CIGAR in String form ala SAM text file. "*" means empty CIGAR.java.lang.RuntimeException - if textCigar is invalid at the most basic level.