public class WholeGenomeReferenceSequenceMask extends java.lang.Object implements ReferenceSequenceMask
| Constructor and Description |
|---|
WholeGenomeReferenceSequenceMask(SAMFileHeader header) |
| Modifier and Type | Method and Description |
|---|---|
boolean |
get(int sequenceIndex,
int position)
It is required that sequenceIndex is >= any previous sequenceIndex passed to this class.
|
int |
getMaxPosition() |
int |
getMaxSequenceIndex() |
int |
nextPosition(int sequenceIndex,
int position)
It is required that sequenceIndex is >= any previous sequenceIndex passed to this class.
|
public WholeGenomeReferenceSequenceMask(SAMFileHeader header)
public boolean get(int sequenceIndex,
int position)
ReferenceSequenceMaskget in interface ReferenceSequenceMaskpublic int nextPosition(int sequenceIndex,
int position)
ReferenceSequenceMasknextPosition in interface ReferenceSequenceMaskpublic int getMaxSequenceIndex()
getMaxSequenceIndex in interface ReferenceSequenceMaskpublic int getMaxPosition()
getMaxPosition in interface ReferenceSequenceMask