public class ExampleSamUsage
extends java.lang.Object
| Constructor and Description |
|---|
ExampleSamUsage() |
| Modifier and Type | Method and Description |
|---|---|
void |
convertReadNamesToUpperCase(java.io.File inputSamOrBamFile,
java.io.File outputSamOrBamFile)
Read a SAM or BAM file, convert each read name to upper case, and write a new
SAM or BAM file.
|
static SeekableStream |
myIndexSeekableStream() |
void |
openSamExamples()
Example usages of
SamReaderFactory |
public static SeekableStream myIndexSeekableStream()
public void openSamExamples()
throws java.net.MalformedURLException
SamReaderFactoryjava.net.MalformedURLExceptionpublic void convertReadNamesToUpperCase(java.io.File inputSamOrBamFile,
java.io.File outputSamOrBamFile)
throws java.io.IOException
java.io.IOException