public static class BCF2FieldWriter.IGFGenotypesWriter extends BCF2FieldWriter.GenotypesWriter
BCF2FieldWriter.FTGenotypesWriter, BCF2FieldWriter.GenericSiteWriter, BCF2FieldWriter.GenotypesWriter, BCF2FieldWriter.GTWriter, BCF2FieldWriter.IGFGenotypesWriter, BCF2FieldWriter.IntegerTypeGenotypesWriter, BCF2FieldWriter.SiteWriter, BCF2FieldWriter.StaticallyTypeGenotypesWriter| Constructor and Description |
|---|
IGFGenotypesWriter(VCFHeader header,
BCF2FieldEncoder fieldEncoder,
IntGenotypeFieldAccessors.Accessor ige) |
| Modifier and Type | Method and Description |
|---|---|
void |
addGenotype(BCF2Encoder encoder,
VariantContext vc,
Genotype g) |
protected int |
numElements(VariantContext vc,
Genotype g) |
void |
start(BCF2Encoder encoder,
VariantContext vc) |
done, getField, getFieldEncoder, getHeader, toStringpublic IGFGenotypesWriter(VCFHeader header, BCF2FieldEncoder fieldEncoder, IntGenotypeFieldAccessors.Accessor ige)
public void start(BCF2Encoder encoder, VariantContext vc) throws java.io.IOException
start in class BCF2FieldWriter.GenotypesWriterjava.io.IOExceptionpublic void addGenotype(BCF2Encoder encoder, VariantContext vc, Genotype g) throws java.io.IOException
addGenotype in class BCF2FieldWriter.GenotypesWriterjava.io.IOExceptionprotected int numElements(VariantContext vc, Genotype g)
numElements in class BCF2FieldWriter.GenotypesWriter