public class SAMValidationError
extends java.lang.Object
implements java.io.Serializable
| Modifier and Type | Class and Description |
|---|---|
static class |
SAMValidationError.Severity |
static class |
SAMValidationError.Type |
| Modifier and Type | Field and Description |
|---|---|
static long |
serialVersionUID |
| Constructor and Description |
|---|
SAMValidationError(SAMValidationError.Type type,
java.lang.String message,
java.lang.String readName)
Construct a SAMValidationError with unknown record number.
|
SAMValidationError(SAMValidationError.Type type,
java.lang.String message,
java.lang.String readName,
long recordNumber)
Construct a SAMValidationError with possibly-known record number.
|
| Modifier and Type | Method and Description |
|---|---|
java.lang.String |
getMessage() |
java.lang.String |
getReadName()
may be null
|
long |
getRecordNumber()
1-based.
|
java.lang.String |
getSource() |
SAMValidationError.Type |
getType() |
void |
setRecordNumber(long recordNumber) |
void |
setSource(java.lang.String source) |
java.lang.String |
toString() |
public static final long serialVersionUID
public SAMValidationError(SAMValidationError.Type type, java.lang.String message, java.lang.String readName)
type - message - readName - May be null if readName is not known.public SAMValidationError(SAMValidationError.Type type, java.lang.String message, java.lang.String readName, long recordNumber)
type - message - readName - May be null if readName is not known.recordNumber - Position of the record in the SAM file it has been read from. -1 if not known.public java.lang.String toString()
toString in class java.lang.Objectpublic SAMValidationError.Type getType()
public java.lang.String getMessage()
public java.lang.String getReadName()
public long getRecordNumber()
public void setRecordNumber(long recordNumber)
public java.lang.String getSource()
public void setSource(java.lang.String source)