| Interface | Description |
|---|---|
| ReadFeature |
An interface to capture data in read coordinates.
|
| Class | Description |
|---|---|
| BaseQualityScore |
A read feature representing a single quality score in a read.
|
| Bases | |
| Deletion |
A read feature representing a deletion of one or more bases similar to
CigarOperator.D. |
| HardClip |
A read feature representing a hard clip similar to
CigarOperator.H. |
| InsertBase |
A read feature representing a single insert base.
|
| Insertion |
A read feature representing a multi-base insertion.
|
| Padding |
A read feature representing padding, similar to
CigarOperator.P. |
| ReadBase |
A read feature representing a single base with associated quality score.
|
| RefSkip |
A read feature representing a reference skip similar to
CigarOperator.N. |
| Scores |
A read feature representing a contiguous stretch of quality scores in a read.
|
| SoftClip |
A read feature representing a soft clip similar to
CigarOperator.S. |
| Substitution |
A substitution event captured in read coordinates.
|