public class IntervalListReferenceSequenceMask extends java.lang.Object implements ReferenceSequenceMask
| Constructor and Description |
|---|
IntervalListReferenceSequenceMask(IntervalList intervalList) |
| Modifier and Type | Method and Description |
|---|---|
boolean |
get(int sequenceIndex,
int position)
It is required that sequenceIndex is >= any previous sequenceIndex passed to this class.
|
SAMFileHeader |
getHeader() |
int |
getMaxPosition() |
int |
getMaxSequenceIndex() |
int |
nextPosition(int sequenceIndex,
int position)
It is required that sequenceIndex is >= any previous sequenceIndex passed to this class.
|
public IntervalListReferenceSequenceMask(IntervalList intervalList)
public boolean get(int sequenceIndex,
int position)
get in interface ReferenceSequenceMaskpublic int nextPosition(int sequenceIndex,
int position)
nextPosition in interface ReferenceSequenceMaskpublic int getMaxSequenceIndex()
getMaxSequenceIndex in interface ReferenceSequenceMaskpublic int getMaxPosition()
getMaxPosition in interface ReferenceSequenceMaskpublic SAMFileHeader getHeader()