public class SoftClip extends java.lang.Object implements java.io.Serializable, ReadFeature
CigarOperator.S.| Modifier and Type | Field and Description |
|---|---|
static byte |
operator |
| Constructor and Description |
|---|
SoftClip() |
SoftClip(int position,
byte[] sequence) |
| Modifier and Type | Method and Description |
|---|---|
boolean |
equals(java.lang.Object obj) |
byte |
getOperator()
Read features are distinguished by operator, similar to cigar operator.
|
int |
getPosition() |
byte[] |
getSequence() |
void |
setPosition(int position) |
void |
setSequence(byte[] sequence) |
java.lang.String |
toString() |
public static final byte operator
public SoftClip()
public SoftClip(int position,
byte[] sequence)
public byte[] getSequence()
public void setSequence(byte[] sequence)
public byte getOperator()
ReadFeaturegetOperator in interface ReadFeaturepublic int getPosition()
getPosition in interface ReadFeaturepublic void setPosition(int position)
setPosition in interface ReadFeaturepublic boolean equals(java.lang.Object obj)
equals in class java.lang.Objectpublic java.lang.String toString()
toString in class java.lang.Object