public class SAMTestUtil
extends java.lang.Object
| Modifier and Type | Class and Description |
|---|---|
static class |
SAMTestUtil.SanityCheckFailedException
Indicates that a required sanity-check condition was not met.
|
| Constructor and Description |
|---|
SAMTestUtil() |
| Modifier and Type | Method and Description |
|---|---|
void |
assertPairValid(SAMRecord firstEnd,
SAMRecord secondEnd)
Basic sanity check for a pair of SAMRecords.
|
static void |
assertReadValid(SAMRecord read)
Basic sanity check for a SAMRecord.
|
public void assertPairValid(SAMRecord firstEnd, SAMRecord secondEnd) throws SAMTestUtil.SanityCheckFailedException
SAMTestUtil.SanityCheckFailedException - if the sanity check failedpublic static void assertReadValid(SAMRecord read) throws SAMTestUtil.SanityCheckFailedException
read - SAM recordjava.lang.IllegalArgumentException - if read is nullSAMTestUtil.SanityCheckFailedException - if errors