Metadata-Version: 2.4
Name: mist_typing
Version: 1.1.0
Summary: multi-locus sequence typing (MLST) and cgMLST
Author-email: Bert Bogaerts <bioit@sciensano.be>
License-Expression: GPL-3.0-or-later
Project-URL: Homepage, https://github.com/BioinformaticsPlatformWIV-ISP/MiST
Project-URL: Issues, https://github.com/BioinformaticsPlatformWIV-ISP/MiST/issues
Keywords: typing,mlst,phylogeny
Classifier: Development Status :: 4 - Beta
Classifier: Intended Audience :: Science/Research
Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
Classifier: Programming Language :: Python :: 3
Requires-Python: >=3
Description-Content-Type: text/markdown
License-File: LICENSE
Requires-Dist: biopython
Requires-Dist: bs4
Requires-Dist: click
Requires-Dist: furl
Requires-Dist: pandas
Requires-Dist: pytest
Requires-Dist: pytest-xdist
Requires-Dist: rauth
Requires-Dist: requests
Dynamic: license-file

[![PyPI version](https://badge.fury.io/py/mist_typing.svg)](https://badge.fury.io/py/mist_typing)
[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat-square)](http://bioconda.github.io/recipes/mist_typing/README.html)

# MiST

MiST is a rapid, accurate and flexible (core-genome) multi-locus sequence typing (MLST) allele caller.
It provides tools to download, index, and query schemes, as well as to construct (cg)MLST-based phylogenies.

# DOCUMENTATION

The documentation is available on the [Wiki](https://github.com/BioinformaticsPlatformWIV-ISP/MiST/wiki).

# CONTACT
[Create an issue](https://github.com/BioinformaticsPlatformWIV-ISP/MiST/issues) to report bugs, propose new functions 
or ask for help.

# CITATION

Bogaerts, B., Roosens, N.H.C. & Vanneste, K. MiST: rapid, accurate and flexible (core-genome) multi-locus sequence typing (MLST) allele calling from draft genomes. BMC Genomics (2025). https://doi.org/10.1186/s12864-025-12324-z
