python-scripts/fastoma-batch-roothogs
python-scripts/fastoma-check-input
python-scripts/fastoma-collect-subhogs
python-scripts/fastoma-helper
python-scripts/fastoma-infer-roothogs
python-scripts/fastoma-infer-subhogs
site-packages/FastOMA/__init__.py
site-packages/FastOMA/_hog_class.py
site-packages/FastOMA/_infer_subhog.py
site-packages/FastOMA/_utils_frag_SO_detection.py
site-packages/FastOMA/_utils_roothog.py
site-packages/FastOMA/_utils_subhog.py
site-packages/FastOMA/_wrappers.py
site-packages/FastOMA/batch_roothogs.py
site-packages/FastOMA/check_input.py
site-packages/FastOMA/collect_subhogs.py
site-packages/FastOMA/fastoma_notebook_stat.ipynb
site-packages/FastOMA/helper_scripts.py
site-packages/FastOMA/infer_roothogs.py
site-packages/FastOMA/infer_subhogs.py
site-packages/FastOMA/logging_setup.py
site-packages/FastOMA/transformer.py
site-packages/FastOMA/zoo/README.md
site-packages/FastOMA/zoo/__init__.py
site-packages/FastOMA/zoo/familyanalyzer/__init__.py
site-packages/FastOMA/zoo/familyanalyzer/genetree.py
site-packages/FastOMA/zoo/familyanalyzer/newick.py
site-packages/FastOMA/zoo/familyanalyzer/orthoxmlquery.py
site-packages/FastOMA/zoo/familyanalyzer/taxonomy.py
site-packages/FastOMA/zoo/familyanalyzer/tools.py
site-packages/FastOMA/zoo/file_utils/__init__.py
site-packages/FastOMA/zoo/file_utils/context_managers.py
site-packages/FastOMA/zoo/file_utils/extractors.py
site-packages/FastOMA/zoo/hog/__init__.py
site-packages/FastOMA/zoo/hog/convert.py
site-packages/FastOMA/zoo/hog/extract_groups.py
site-packages/FastOMA/zoo/hog/extract_hog_info.py
site-packages/FastOMA/zoo/hog/filter_orthoxml.py
site-packages/FastOMA/zoo/hog/orthoxml_merge.py
site-packages/FastOMA/zoo/hog/transform.py
site-packages/FastOMA/zoo/seq_utils/__init__.py
site-packages/FastOMA/zoo/seq_utils/utils.py
site-packages/FastOMA/zoo/unionfind.py
site-packages/FastOMA/zoo/utils.py
site-packages/FastOMA/zoo/wrappers/__init__.py
site-packages/FastOMA/zoo/wrappers/abstract_cli.py
site-packages/FastOMA/zoo/wrappers/aligners/__init__.py
site-packages/FastOMA/zoo/wrappers/aligners/base_aligner.py
site-packages/FastOMA/zoo/wrappers/aligners/mafft.py
site-packages/FastOMA/zoo/wrappers/aligners/muscle.py
site-packages/FastOMA/zoo/wrappers/aligners/probcons.py
site-packages/FastOMA/zoo/wrappers/aligners/prographmsa.py
site-packages/FastOMA/zoo/wrappers/modeltesters/__init__.py
site-packages/FastOMA/zoo/wrappers/modeltesters/base_modeltester.py
site-packages/FastOMA/zoo/wrappers/modeltesters/parsers.py
site-packages/FastOMA/zoo/wrappers/modeltesters/prottest.py
site-packages/FastOMA/zoo/wrappers/options.py
site-packages/FastOMA/zoo/wrappers/treebuilders/__init__.py
site-packages/FastOMA/zoo/wrappers/treebuilders/base_treebuilder.py
site-packages/FastOMA/zoo/wrappers/treebuilders/fasttree.py
site-packages/FastOMA/zoo/wrappers/treebuilders/guenomu.py
site-packages/FastOMA/zoo/wrappers/treebuilders/iqtree.py
site-packages/FastOMA/zoo/wrappers/treebuilders/parsers.py
site-packages/FastOMA/zoo/wrappers/treebuilders/phyml.py
site-packages/FastOMA/zoo/wrappers/treebuilders/raxml.py
site-packages/FastOMA/zoo/wrappers/trimmers/__init__.py
site-packages/FastOMA/zoo/wrappers/trimmers/base_trimmer.py
site-packages/FastOMA/zoo/wrappers/trimmers/trimal.py
site-packages/fastoma-0.5.0.dist-info/INSTALLER
site-packages/fastoma-0.5.0.dist-info/METADATA
site-packages/fastoma-0.5.0.dist-info/RECORD
site-packages/fastoma-0.5.0.dist-info/REQUESTED
site-packages/fastoma-0.5.0.dist-info/WHEEL
site-packages/fastoma-0.5.0.dist-info/direct_url.json
site-packages/fastoma-0.5.0.dist-info/entry_points.txt
