DAJIN2
Genotyping tool for genome editing
Analysis Mode
Single Sample Analysis
Batch Processing
Project Name
*
This will be the name of the result folder
Sample Directory
*
Select a folder containing sample files
• Supported formats: FASTQ (.fastq, .fq, .fastq.gz, .fq.gz), FASTA (.fasta, .fa, .fasta.gz, .fa.gz), or BAM (.bam)
• All files in the folder must have the same format
• Click "Choose Files" and select any file in your sample directory
Control Directory
*
Select a folder containing control files
• Supported formats: FASTQ (.fastq, .fq, .fastq.gz, .fq.gz), FASTA (.fasta, .fa, .fasta.gz, .fa.gz), or BAM (.bam)
• All files in the folder must have the same format
• Click "Choose Files" and select any file in your control directory
Allele FASTA
*
Multiple files can be selected (.fasta, .fa)
Reference Genome
(Optional)
Enter genome ID if using reference
BED File
(Optional)
Upload a BED6 file for genomic coordinates
• Use when reference genome is not from UCSC
• BED6 format required (6 columns)
• Strand must match FASTA allele orientation
Threads
(Optional)
Number of parallel processing threads (1-32)
Disable minor allele filtering (keep alleles <0.5%)
Enable this for detecting rare mutations or somatic mosaicism
Batch File
*
Upload a CSV or Excel file with sample information
Required columns:
sample
,
control
,
allele
,
name
Optional columns:
genome
,
bed
(or
genome_coordinate
)
View batch file format guide
Threads
(Optional)
Number of parallel processing threads (1-32)
Disable minor allele filtering (keep alleles <0.5%)
Start Analysis
Analysis Log
00:00:00
Live updates from DAJIN2
Starting analysis...
Analysis Results
Unix Path:
Windows Path:
📁 Open Results Folder
📋 Copy Unix Path
📋 Copy Windows Path
🔄 Start New Analysis
An Error Occurred
🔄 Retry