| add_legend | add_legend | 
| alluvial_enriched | alluvial_enriched | 
| alluvial_enrichment_tests | alluvial_enrichment_tests | 
| calculate_centrality_scores | calculate_centrality_scores | 
| default_size | default_size | 
| draw_alluvial_plot | draw_alluvial_plot | 
| example_clusters | Randomly generated example datasets for XINA users. A dataset containing the XINA clustering results. | 
| extract_data_column | extract_data_column | 
| find_similar_clusters | find_similar_clusters | 
| generate_count_table | generate_count_table | 
| generate_superset | generate_superset | 
| get_colors | get_colors | 
| get_color_for_nodes | get_color_for_nodes | 
| get_comigrations_by_name | get_comigrations_by_name | 
| get_condition_biased_comigrations | get_condition_biased_comigrations | 
| get_layout | get_layout | 
| get_mTOR_proteins | get_mTOR_proteins | 
| get_random_data | get_random_data | 
| get_stats | get_stats | 
| get_theme_blank | get_theme_blank | 
| get_unknown_ppi_nodes | get_unknown_ppi_nodes | 
| gn | A character vector containing 19,396 human genes This is for the randome data generation of XINA | 
| gn_desc | A character vector containing 19,396 human gene descriptions This is for the randome data generation of XINA | 
| hprd_ppi | Protein-protein interaction resource downloaded from HPRD DB A data frame containing HRPD protein-protein interaction data | 
| length2 | length2 | 
| load_previous_results | load_previous_results | 
| make_random_xina_data | make_random_xina_data | 
| mutate_colors | mutate_colors | 
| organize_clusters | organize_clusters | 
| plot_clusters | plot_clusters | 
| plot_clusters_all | plot_clusters_all | 
| plot_condition_compositions | plot_condition_compositions | 
| plot_enrichment_results | plot_enrichment_results | 
| plot_NA | plot_NA | 
| rank_centrality | rank_centrality | 
| string_example | Protein-protein interaction resource downloaded from STRING DB for XINA's example dataset A data frame containing protein-protein interactions | 
| xina_analysis | xina_analysis | 
| xina_clustering | xina_clustering | 
| xina_enrichment | xina_enrichment | 
| xina_plot_all | xina_plot_all | 
| xina_plot_bycluster | xina_plot_bycluster | 
| xina_plot_single | xina_plot_single | 
| xina_result_example | Previously processed xina analysis using XINA's random example data A list containing 'xina_analysis' results |