| calcLociStat | Calculate the per-cytosine statistics for simple two-group comparisons. |
| calcLociStatTimeCourse | Calculate the per-cytosine statistics for time-course data. |
| createBsseqObject | Helper function to read text files and create a bsseq object. |
| getSigRegion | Obtain the significant DMRs. |
| MethCP | Class 'MethCP' |
| MethCP-class | Class 'MethCP' |
| MethCPFromStat | Create a 'MethCP' object given the per-cytosine based tests. |
| segmentMethCP | Perform segmentation on a 'MethCP' object. |
| show-method | The show method |