| cnvset | Copy Number Variation (CNV) data | 
| computePS | Computes the profile statistics | 
| cptModel | Computes within and between gene feature profile statistics by feature and amongst features | 
| cptPlot | Scatterplot representation of gene sets by change points | 
| cptSlopeplot | Scatterplot representation of identified change points gene set slopes | 
| exprset | Gene Variant (EXP) data | 
| GISPA | Gene Integrates Set Profile Analysis | 
| propBarplot | A plotting function for proportion by sample | 
| stackedBarplot | A plotting function for each sample proportion | 
| varset | Variant (VAR) data |