| FEM-package | Identification of interactome hotspots of differential promoter DNA methylation and differential expression |
| DoEpiMod | Identifies differential DNA methylation network hotspots. |
| DoExpMod | Identifies differential mRNA expression network hotspots. |
| DoFEMbi | Identifies interactome hotspots of differential promoter DNAm methylation and differential mRNA expression. |
| DoIntEpi450k | Integrates statistics of differential DNA methylation for a specified contrast with a network adjacency matrix. |
| DoIntExp | Integrates statistics of differential expression for a specified contrast with a network adjacency matrix. |
| DoIntFEM450k | Integrates statistics of differential DNA methylation and differential expression for a specified contrast with a network adjacency matrix. |
| FEM | Identification of interactome hotspots of differential promoter DNA methylation and differential expression |
| FemModShow | Generates a figure showing the inferred FEM module(s) |
| GenStatM | Generation of differential DNA methylation statistics |
| GenStatMsp | Generation of differential DNA methylation statistics for SingleProbe Mode |
| GenStatR | Generation of differential expression statistics |
| probe450kfemanno | Processed annotation of Illumina 450k probes for use in the FEM algorithm. |
| probeEPICfemanno | Processed annotation of Illumina EPIC probes for use in the FEM algorithm. |
| Realdata | A dataset object derived from real DNA methylation and gene expression data from normal endometrial and endometrial cancer tissue |
| Toydata | Artificial data set. |