| pkg_elbowlib-package | Evaluating foLd change By the lOgit Way |
| analyze_elbow | extracts all elbow statistics and plots and elbow curve. |
| do_elbow | calculates the upper and lower elbow cut-off fold-values |
| do_elbow_rnaseq | Calculates fold values from an MArrayLM object. |
| EcoliMutMA | Escherichia coli str. K-12 substr. MG1655 - EcoliMutMA (GSM576640-45 mutant - G3.2 mutant of E.coli EcNR1, no isobutanol) |
| EcoliWT | Escherichia coli str. K-12 substr. MG1655 - EcoliWT (GSM576634-39 WT - WT E.coli EcNR1, no isobutanol) |
| elbowlib | Evaluating foLd change By the lOgit Way |
| elbow_variance | calculates the variance for the upper and lower limits of an Elbow curve |
| extract_working_sets | extract the initial and final conditions from a table. |
| get_elbow_limma | Calculates fold values from an MArrayLM object. |
| get_pvalue | The calculated \logchi^2 p-value for the fit of the elbow curve to the model. |
| GSE20986_design | Comparative Gene Expression Profiling of HUVEC and Ocular Vascular Endothelial Cells (GEO database entry GSE20986) microarray design data file |
| GSE20986_eset_exprs | Comparative Gene Expression Profiling of HUVEC and Ocular Vascular Endothelial Cells (GEO database entry GSE20986) microarray data eset expression values - SUBSET |
| null_variance | determines the variance for a null Elbow curve |
| pkg_elbowlib | Evaluating foLd change By the lOgit Way |
| plot_dataset | plots data to see if it matches an elbow distribution. |
| plot_elbow | plots Elbow curve data. |
| replicates_to_fold | calculates fold values from a table of experimental data |
| yeast_nbinomTest_results | Pre-processed Yeast sample RNA-seq data |