| BioCor-package | BioCor: A package to calculate functional similarities |
| addSimilarities | Additive integration of similarities |
| AintoB | Insert a matrix into another |
| BioCor | BioCor: A package to calculate functional similarities |
| clusterGeneSim | Similarity score between clusters of genes based on genes similarity |
| clusterGeneSim-method | Similarity score between clusters of genes based on genes similarity |
| clusterSim | Similarity score between clusters of genes based on pathways similarity |
| clusterSim-method | Similarity score between clusters of genes based on pathways similarity |
| combinadic | i-th combination of n elements taken from r |
| combineScores | Combining values |
| combineScoresPar | Combining values |
| combineSources | Combine different sources of pathways |
| conversions | Convert the similarities formats |
| D2J | Convert the similarities formats |
| diceSim | Compare pathways |
| duplicateIndices | Finds the indices of the duplicated events of a vector |
| geneSim | Similarity score genes based on pathways similarity |
| geneSim-method | Similarity score genes based on pathways similarity |
| inverseList | Invert a list |
| J2D | Convert the similarities formats |
| mclusterGeneSim | Similarity score between clusters of genes based on genes similarity |
| mclusterGeneSim-method | Similarity score between clusters of genes based on genes similarity |
| mclusterSim | Similarity score between clusters of genes based on pathways similarity |
| mclusterSim-method | Similarity score between clusters of genes based on pathways similarity |
| mgeneSim | Similarity score genes based on pathways similarity |
| mgeneSim-method | Similarity score genes based on pathways similarity |
| mpathSim | Calculates the Dice similarity between pathways |
| mpathSim-method | Calculates the Dice similarity between pathways |
| pathSim | Calculates the Dice similarity between pathways |
| pathSim-method | Calculates the Dice similarity between pathways |
| removeDup | Remove duplicated rows and columns |
| seq2mat | Transforms a vector to a symmetric matrix |
| similarities | Apply a function to a list of similarities |
| weighted | Weighted operations |
| weighted.prod | Weighted operations |
| weighted.sum | Weighted operations |