| BEARscc-package | BEARscc (Bayesian ERCC Assesstment of Robustness of Single Cell Clusters) |
| . | Reports BEARscc metrics for cells. |
| .Random.seed | BEARscc downstream example objects. |
| analysis_examples | BEARscc downstream example objects. |
| apply_bayes | Estimates noise in single cell data. |
| BEARscc | BEARscc (Bayesian ERCC Assesstment of Robustness of Single Cell Clusters) |
| BEARscc_clusts.df | BEARscc downstream example objects. |
| BEARscc_examples | Example data for BEARscc. |
| BEAR_analyzed.sce | BEARscc downstream example objects. |
| BEAR_examples.sce | Example data for BEARscc. |
| build_dropoutmodel | Estimates noise in single cell data. |
| calculate_cell_metrics | Reports BEARscc metrics for cells. |
| calculate_cell_metrics_by_cluster | Reports BEARscc metrics for cells. |
| calculate_cluster_metrics | Reports BEARscc metrics for clusters. |
| calculate_cluster_metrics_by_cluster | Reports BEARscc metrics for clusters. |
| cleanup_model_names | Estimates noise in single cell data. |
| clusters.df | BEARscc downstream example objects. |
| cluster_consensus | Cluster the consensus matrix. |
| compute_alpha | Estimates noise in single cell data. |
| compute_consensus | Compute consensus matrix. |
| compute_genewise_dropouts | Estimates noise in single cell data. |
| counts2mpc | Estimates noise in single cell data. |
| create_cm | Compute consensus matrix. |
| create_null_dropout_model | Estimates noise in single cell data. |
| data.counts.df | Example data for BEARscc. |
| ERCC.counts.df | Example data for BEARscc. |
| ERCC.meta.df | Example data for BEARscc. |
| estimate_missingdata | Estimates noise in single cell data. |
| estimate_mu2sigma | Estimates noise in single cell data. |
| estimate_noiseparameters | Estimates noise in single cell data. |
| estimate_undetected2molpercell | Estimates noise in single cell data. |
| example_code | Computes 'BEARscc' simulated technical replicates. |
| execute_noiseinjected_counts | Computes 'BEARscc' simulated technical replicates. |
| execute_sim_replicates | Computes 'BEARscc' simulated technical replicates. |
| fill_out_count_probability_table | Computes 'BEARscc' simulated technical replicates. |
| genewise_dropouts | Computes 'BEARscc' simulated technical replicates. |
| gene_name | Computes 'BEARscc' simulated technical replicates. |
| HPC_simulate_replicates | Computes 'BEARscc' simulated technical replicates. |
| iterate_alphas | Estimates noise in single cell data. |
| iterate_spikeins | Estimates noise in single cell data. |
| L1 | Reports BEARscc metrics for clusters. |
| mean.prom | Reports BEARscc metrics for clusters. |
| melt_spikeins | Estimates noise in single cell data. |
| noise_consensus | BEARscc downstream example objects. |
| Overall.mean | Reports BEARscc metrics for clusters. |
| permute_count_in_dropout_range | Computes 'BEARscc' simulated technical replicates. |
| plot_alpha2mu | Estimates noise in single cell data. |
| plot_cluster_metrics | Reports BEARscc metrics for clusters. |
| plot_mu2sigma | Estimates noise in single cell data. |
| plot_obs2actual | Estimates noise in single cell data. |
| plot_spikein_fits | Estimates noise in single cell data. |
| prepare_data | Estimates noise in single cell data. |
| randomizer | Computes 'BEARscc' simulated technical replicates. |
| recluster | BEARscc downstream example objects. |
| report_cell_metrics | Reports BEARscc metrics for cells. |
| report_cluster_metrics | Reports BEARscc metrics for clusters. |
| rn | Reports BEARscc metrics for cells. |
| sample_models | Estimates noise in single cell data. |
| simulate_replicates | Computes 'BEARscc' simulated technical replicates. |
| size | Reports BEARscc metrics for clusters. |
| subcompute_sample_models | Estimates noise in single cell data. |
| subplot_spikein_fits | Estimates noise in single cell data. |
| transcripts | Estimates noise in single cell data. |
| V1 | Estimates noise in single cell data. |
| value | Reports BEARscc metrics for clusters. |
| write_noise_model | Estimates noise in single cell data. |