bin/add_read_counts.py
bin/check_intron_chains.pl
bin/create_exon_fasta.py
bin/fastqToFasta.pl
bin/find_path.py
bin/fix_junctions.pl
bin/generate_gtf.py
bin/gffcompare
bin/gffread
bin/jellyfish
bin/majority_vote.pl
bin/majority_vote.py
bin/merge_coords
bin/nifflr.sh
bin/psa_aligner
bin/quantify.pl
bin/trmap
bin/ufasta
include/jellyfish-1/jellyfish/allocators_mmap.hpp
include/jellyfish-1/jellyfish/atomic_bits_array.hpp
include/jellyfish-1/jellyfish/atomic_field.hpp
include/jellyfish-1/jellyfish/atomic_gcc.hpp
include/jellyfish-1/jellyfish/backtrace.hpp
include/jellyfish-1/jellyfish/binary_dumper.hpp
include/jellyfish-1/jellyfish/bloom_common.hpp
include/jellyfish-1/jellyfish/bloom_counter2.hpp
include/jellyfish-1/jellyfish/bloom_filter.hpp
include/jellyfish-1/jellyfish/circular_buffer.hpp
include/jellyfish-1/jellyfish/compare_and_swap.hpp
include/jellyfish-1/jellyfish/cooperative_pool.hpp
include/jellyfish-1/jellyfish/cooperative_pool2.hpp
include/jellyfish-1/jellyfish/cpp_array.hpp
include/jellyfish-1/jellyfish/divisor.hpp
include/jellyfish-1/jellyfish/dumper.hpp
include/jellyfish-1/jellyfish/err.hpp
include/jellyfish-1/jellyfish/file_header.hpp
include/jellyfish-1/jellyfish/generator_manager.hpp
include/jellyfish-1/jellyfish/generic_file_header.hpp
include/jellyfish-1/jellyfish/hash_counter.hpp
include/jellyfish-1/jellyfish/int128.hpp
include/jellyfish-1/jellyfish/jellyfish.hpp
include/jellyfish-1/jellyfish/json.h
include/jellyfish-1/jellyfish/large_hash_array.hpp
include/jellyfish-1/jellyfish/large_hash_iterator.hpp
include/jellyfish-1/jellyfish/locks_pthread.hpp
include/jellyfish-1/jellyfish/mapped_file.hpp
include/jellyfish-1/jellyfish/mer_dna.hpp
include/jellyfish-1/jellyfish/mer_dna_bloom_counter.hpp
include/jellyfish-1/jellyfish/mer_heap.hpp
include/jellyfish-1/jellyfish/mer_iterator.hpp
include/jellyfish-1/jellyfish/mer_overlap_sequence_parser.hpp
include/jellyfish-1/jellyfish/mer_qual_iterator.hpp
include/jellyfish-1/jellyfish/misc.hpp
include/jellyfish-1/jellyfish/offsets_key_value.hpp
include/jellyfish-1/jellyfish/parser_common.hpp
include/jellyfish-1/jellyfish/rectangular_binary_matrix.hpp
include/jellyfish-1/jellyfish/sam_format.hpp
include/jellyfish-1/jellyfish/simple_circular_buffer.hpp
include/jellyfish-1/jellyfish/sorted_dumper.hpp
include/jellyfish-1/jellyfish/stdio_filebuf.hpp
include/jellyfish-1/jellyfish/storage.hpp
include/jellyfish-1/jellyfish/stream_iterator.hpp
include/jellyfish-1/jellyfish/stream_manager.hpp
include/jellyfish-1/jellyfish/text_dumper.hpp
include/jellyfish-1/jellyfish/thread_exec.hpp
include/jellyfish-1/jellyfish/time.hpp
include/jellyfish-1/jellyfish/token_ring.hpp
include/jellyfish-1/jellyfish/whole_sequence_parser.hpp
lib/libjellyfish-2.0.a
lib/libjellyfish-2.0.so
lib/libjellyfish-2.0.so.2
lib/libjellyfish-2.0.so.2.0.0
lib/perl/jellyfish.a
lib/perl/jellyfish.pm
lib/perl/jellyfish.so
lib/perl/jellyfish.so.0
lib/perl/jellyfish.so.0.0.0
lib/pkgconfig/jellyfish-2.0.pc
share/man/man1/jellyfish.1
