include/Bpp/App/ApplicationTools.h
include/Bpp/App/BppApplication.h
include/Bpp/App/NumCalcApplicationTools.h
include/Bpp/BppBoolean.h
include/Bpp/BppString.h
include/Bpp/BppVector.h
include/Bpp/Clonable.h
include/Bpp/Exceptions.h
include/Bpp/Graph/AssociationDAGraphImplObserver.h
include/Bpp/Graph/AssociationDAGraphObserver.h
include/Bpp/Graph/AssociationGraphImplObserver.h
include/Bpp/Graph/AssociationGraphObserver.h
include/Bpp/Graph/AssociationTreeGraphImplObserver.h
include/Bpp/Graph/AssociationTreeGraphObserver.h
include/Bpp/Graph/DAGraph.h
include/Bpp/Graph/DAGraphImpl.h
include/Bpp/Graph/GlobalGraph.h
include/Bpp/Graph/Graph.h
include/Bpp/Graph/GraphObserver.h
include/Bpp/Graph/TreeGraph.h
include/Bpp/Graph/TreeGraphImpl.h
include/Bpp/Graphics/AbstractGraphicDevice.h
include/Bpp/Graphics/ColorManager.h
include/Bpp/Graphics/ColorSet.h
include/Bpp/Graphics/ColorTools.h
include/Bpp/Graphics/DefaultColorSet.h
include/Bpp/Graphics/Fig/XFigGraphicDevice.h
include/Bpp/Graphics/Fig/XFigLaTeXFontManager.h
include/Bpp/Graphics/Fig/XFigPostscriptFontManager.h
include/Bpp/Graphics/Font/Font.h
include/Bpp/Graphics/Font/FontManager.h
include/Bpp/Graphics/GraphicDevice.h
include/Bpp/Graphics/Latex/DvipsColorSet.h
include/Bpp/Graphics/Latex/PgfGraphicDevice.h
include/Bpp/Graphics/Molscript/MolscriptColorSet.h
include/Bpp/Graphics/Point2D.h
include/Bpp/Graphics/Point2DTools.h
include/Bpp/Graphics/R/RColorSet.h
include/Bpp/Graphics/RgbColor.h
include/Bpp/Graphics/Svg/SvgGraphicDevice.h
include/Bpp/Io/BppODiscreteDistributionFormat.h
include/Bpp/Io/BppOParametrizableFormat.h
include/Bpp/Io/FileTools.h
include/Bpp/Io/IoDiscreteDistribution.h
include/Bpp/Io/IoDiscreteDistributionFactory.h
include/Bpp/Io/IoFormat.h
include/Bpp/Io/IoParametrizable.h
include/Bpp/Io/OutputStream.h
include/Bpp/Numeric/AbstractParameterAliasable.h
include/Bpp/Numeric/AbstractParametrizable.h
include/Bpp/Numeric/AdaptiveKernelDensityEstimation.h
include/Bpp/Numeric/AutoParameter.h
include/Bpp/Numeric/Constraints.h
include/Bpp/Numeric/DataTable.h
include/Bpp/Numeric/Function/AbstractOptimizer.h
include/Bpp/Numeric/Function/BfgsMultiDimensions.h
include/Bpp/Numeric/Function/BrentOneDimension.h
include/Bpp/Numeric/Function/ConjugateGradientMultiDimensions.h
include/Bpp/Numeric/Function/DirectionFunction.h
include/Bpp/Numeric/Function/DownhillSimplexMethod.h
include/Bpp/Numeric/Function/FivePointsNumericalDerivative.h
include/Bpp/Numeric/Function/FunctionTools.h
include/Bpp/Numeric/Function/Functions.h
include/Bpp/Numeric/Function/GoldenSectionSearch.h
include/Bpp/Numeric/Function/MetaOptimizer.h
include/Bpp/Numeric/Function/NewtonBacktrackOneDimension.h
include/Bpp/Numeric/Function/NewtonOneDimension.h
include/Bpp/Numeric/Function/NumericalDerivative.h
include/Bpp/Numeric/Function/OneDimensionOptimizationTools.h
include/Bpp/Numeric/Function/Operators/BinaryOperator.h
include/Bpp/Numeric/Function/Operators/ComputationTree.h
include/Bpp/Numeric/Function/Operators/ConstantOperator.h
include/Bpp/Numeric/Function/Operators/FunctionOperator.h
include/Bpp/Numeric/Function/Operators/MathOperator.h
include/Bpp/Numeric/Function/Operators/NegativeOperator.h
include/Bpp/Numeric/Function/Operators/Operator.h
include/Bpp/Numeric/Function/OptimizationStopCondition.h
include/Bpp/Numeric/Function/Optimizer.h
include/Bpp/Numeric/Function/PowellMultiDimensions.h
include/Bpp/Numeric/Function/ReparametrizationFunctionWrapper.h
include/Bpp/Numeric/Function/SimpleMultiDimensions.h
include/Bpp/Numeric/Function/SimpleNewtonMultiDimensions.h
include/Bpp/Numeric/Function/ThreePointsNumericalDerivative.h
include/Bpp/Numeric/Function/TwoPointsNumericalDerivative.h
include/Bpp/Numeric/Hmm/AbstractHmmTransitionMatrix.h
include/Bpp/Numeric/Hmm/AutoCorrelationTransitionMatrix.h
include/Bpp/Numeric/Hmm/FullHmmTransitionMatrix.h
include/Bpp/Numeric/Hmm/HmmEmissionProbabilities.h
include/Bpp/Numeric/Hmm/HmmExceptions.h
include/Bpp/Numeric/Hmm/HmmLikelihood.h
include/Bpp/Numeric/Hmm/HmmStateAlphabet.h
include/Bpp/Numeric/Hmm/HmmTransitionMatrix.h
include/Bpp/Numeric/Hmm/LogsumHmmLikelihood.h
include/Bpp/Numeric/Hmm/LowMemoryRescaledHmmLikelihood.h
include/Bpp/Numeric/Hmm/RescaledHmmLikelihood.h
include/Bpp/Numeric/IntegerTools.h
include/Bpp/Numeric/Matrix/EigenValue.h
include/Bpp/Numeric/Matrix/LUDecomposition.h
include/Bpp/Numeric/Matrix/Matrix.h
include/Bpp/Numeric/Matrix/MatrixTools.h
include/Bpp/Numeric/NumConstants.h
include/Bpp/Numeric/NumTools.h
include/Bpp/Numeric/Number.h
include/Bpp/Numeric/Parameter.h
include/Bpp/Numeric/ParameterAliasable.h
include/Bpp/Numeric/ParameterExceptions.h
include/Bpp/Numeric/ParameterList.h
include/Bpp/Numeric/Parametrizable.h
include/Bpp/Numeric/ParametrizableCollection.h
include/Bpp/Numeric/Prob/AbstractDiscreteDistribution.h
include/Bpp/Numeric/Prob/BetaDiscreteDistribution.h
include/Bpp/Numeric/Prob/ConstantDistribution.h
include/Bpp/Numeric/Prob/DirichletDiscreteDistribution.h
include/Bpp/Numeric/Prob/DiscreteDistribution.h
include/Bpp/Numeric/Prob/ExponentialDiscreteDistribution.h
include/Bpp/Numeric/Prob/GammaDiscreteDistribution.h
include/Bpp/Numeric/Prob/GaussianDiscreteDistribution.h
include/Bpp/Numeric/Prob/InvariantMixedDiscreteDistribution.h
include/Bpp/Numeric/Prob/MixtureOfDiscreteDistributions.h
include/Bpp/Numeric/Prob/MultipleDiscreteDistribution.h
include/Bpp/Numeric/Prob/SimpleDiscreteDistribution.h
include/Bpp/Numeric/Prob/Simplex.h
include/Bpp/Numeric/Prob/TruncatedExponentialDiscreteDistribution.h
include/Bpp/Numeric/Prob/UniformDiscreteDistribution.h
include/Bpp/Numeric/Random/ContingencyTableGenerator.h
include/Bpp/Numeric/Random/RandomTools.h
include/Bpp/Numeric/Range.h
include/Bpp/Numeric/Stat/ContingencyTableTest.h
include/Bpp/Numeric/Stat/Mva/CorrespondenceAnalysis.h
include/Bpp/Numeric/Stat/Mva/DualityDiagram.h
include/Bpp/Numeric/Stat/Mva/PrincipalComponentAnalysis.h
include/Bpp/Numeric/Stat/StatTest.h
include/Bpp/Numeric/Stat/StatTools.h
include/Bpp/Numeric/Table.h
include/Bpp/Numeric/TableExceptions.h
include/Bpp/Numeric/TransformedParameter.h
include/Bpp/Numeric/VectorExceptions.h
include/Bpp/Numeric/VectorTools.h
include/Bpp/Text/KeyvalTools.h
include/Bpp/Text/NestedStringTokenizer.h
include/Bpp/Text/StringTokenizer.h
include/Bpp/Text/TextTools.h
include/Bpp/Utils/AttributesTools.h
include/Bpp/Utils/MapTools.h
include/Bpp/Version.h
lib/cmake/bpp-core/bpp-core-config-version.cmake
lib/cmake/bpp-core/bpp-core-config.cmake
lib/cmake/bpp-core/bpp-core-targets-relwithdebinfo.cmake
lib/cmake/bpp-core/bpp-core-targets.cmake
lib/libbpp-core.so
lib/libbpp-core.so.6
lib/libbpp-core.so.6.0.0
