bin/RNAshapes
bin/RNAshapes_eval_macrostate
bin/RNAshapes_eval_microstate
bin/RNAshapes_eval_nodangle
bin/RNAshapes_eval_overdangle
bin/RNAshapes_mea_microstate
bin/RNAshapes_mea_microstate_window
bin/RNAshapes_mea_nodangle
bin/RNAshapes_mea_nodangle_window
bin/RNAshapes_mea_overdangle
bin/RNAshapes_mea_overdangle_window
bin/RNAshapes_mfe_macrostate
bin/RNAshapes_mfe_macrostate_window
bin/RNAshapes_mfe_microstate
bin/RNAshapes_mfe_microstate_window
bin/RNAshapes_mfe_nodangle
bin/RNAshapes_mfe_nodangle_window
bin/RNAshapes_mfe_overdangle
bin/RNAshapes_mfe_overdangle_window
bin/RNAshapes_outside_microstate
bin/RNAshapes_outside_nodangle
bin/RNAshapes_outside_overdangle
bin/RNAshapes_pfall_macrostate
bin/RNAshapes_pfall_macrostate_window
bin/RNAshapes_pfall_microstate
bin/RNAshapes_pfall_microstate_window
bin/RNAshapes_pfall_nodangle
bin/RNAshapes_pfall_nodangle_window
bin/RNAshapes_pfall_overdangle
bin/RNAshapes_pfall_overdangle_window
bin/RNAshapes_probing_macrostate
bin/RNAshapes_probing_macrostate_window
bin/RNAshapes_probing_microstate
bin/RNAshapes_probing_microstate_window
bin/RNAshapes_probing_nodangle
bin/RNAshapes_probing_nodangle_window
bin/RNAshapes_probing_overdangle
bin/RNAshapes_probing_overdangle_window
bin/RNAshapes_probs_macrostate
bin/RNAshapes_probs_macrostate_window
bin/RNAshapes_probs_microstate
bin/RNAshapes_probs_microstate_window
bin/RNAshapes_probs_nodangle
bin/RNAshapes_probs_nodangle_window
bin/RNAshapes_probs_overdangle
bin/RNAshapes_probs_overdangle_window
bin/RNAshapes_sample_macrostate
bin/RNAshapes_sample_macrostate_window
bin/RNAshapes_sample_microstate
bin/RNAshapes_sample_microstate_window
bin/RNAshapes_sample_nodangle
bin/RNAshapes_sample_nodangle_window
bin/RNAshapes_sample_overdangle
bin/RNAshapes_sample_overdangle_window
bin/RNAshapes_shapes_macrostate
bin/RNAshapes_shapes_macrostate_window
bin/RNAshapes_shapes_microstate
bin/RNAshapes_shapes_microstate_window
bin/RNAshapes_shapes_nodangle
bin/RNAshapes_shapes_nodangle_window
bin/RNAshapes_shapes_overdangle
bin/RNAshapes_shapes_overdangle_window
bin/RNAshapes_subopt_macrostate
bin/RNAshapes_subopt_macrostate_window
bin/RNAshapes_subopt_microstate
bin/RNAshapes_subopt_microstate_window
bin/RNAshapes_subopt_nodangle
bin/RNAshapes_subopt_nodangle_window
bin/RNAshapes_subopt_overdangle
bin/RNAshapes_subopt_overdangle_window
bin/addRNAoptions.pl
lib/foldGrammars/CMs.pm
lib/foldGrammars/ClusterSettings.pm
lib/foldGrammars/IO.pm
lib/foldGrammars/NewCollection.pm
lib/foldGrammars/RNAcast.pm
lib/foldGrammars/RapidShapes.pm
lib/foldGrammars/References.pm
lib/foldGrammars/Settings.pm
lib/foldGrammars/Structure.pm
lib/foldGrammars/Testing.pm
lib/foldGrammars/Utils.pm
