Compute FDR under dependence using NHMM

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Documentation for package ‘NHMMfdr’ version 1.0.6

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NHMMfdr-package Compute FDR under dependence using NHMM
compute.A.nhmm Compute transition probability (internal function)
compute.gradient Intermediate function
em.hmm Intermediate function
em.indep Intermediate function
em.nhmm Intermediate function
fdr.nhmm FDR control based for multiple hypothesis tests under dependence
find.nu Intermediate function
forwardbackward Intermediate function
forwardbackward1 Intermediate function
forwardbackward1.indep Intermediate function
forwardbackward1.indep.kernel Intermediate function
forwardbackward1.kernel Intermediate function
LIS.adjust Determine statistically significant tests at a user-specified FDR level.
NHMMfdr Compute FDR under dependence using NHMM
simdata.nhmm Simulate from a non-homogeneous hidden Markov Model (NHMM).
simdata1.nhmm Intermediate function
update_delta2 Intermediate function
update_trans.prob.nhmm Intermediate function