bcbio Base Functions

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Documentation for package ‘bcbioBase’ version 0.0.3

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bcbioBase-package bcbioBase
AllGenerics S4 Generics
bcbio S4 Generics
bcbio<- S4 Generics
bcbioBase bcbioBase
checkInterestingGroups Check Interesting Groups
flatFiles S4 Generics
interestingGroups S4 Generics
interestingGroups<- S4 Generics
metrics S4 Generics
plotDot S4 Generics
plotGene S4 Generics
plotQC S4 Generics
plotViolin S4 Generics
prepareSummarizedExperiment Prepare Summarized Experiment
prepareSummarizedExperiment-method Prepare Summarized Experiment
prepareTemplate Prepare R Markdown Template File
prepareTemplate-method Prepare R Markdown Template File
readDataVersions Read Data Versions
readDataVersions-method Read Data Versions
readSampleMetadataFile Read Sample Metadata File
readSampleMetadataFile-method Read Sample Metadata File
sampleMetadata S4 Generics
sampleYAML Sample YAML Metadata Utilities
sampleYAML-method Sample YAML Metadata Utilities
sampleYAMLMetadata Sample Metadata from YAML
sampleYAMLMetadata-method Sample Metadata from YAML
sampleYAMLMetrics Sample Metrics from YAML File
sampleYAMLMetrics-method Sample Metrics from YAML File
selectSamples S4 Generics
tpm S4 Generics
uniteInterestingGroups Unite Interesting Groups