lib/R/library/Rhtslib/DESCRIPTION
lib/R/library/Rhtslib/INDEX
lib/R/library/Rhtslib/Meta/Rd.rds
lib/R/library/Rhtslib/Meta/features.rds
lib/R/library/Rhtslib/Meta/hsearch.rds
lib/R/library/Rhtslib/Meta/links.rds
lib/R/library/Rhtslib/Meta/nsInfo.rds
lib/R/library/Rhtslib/Meta/package.rds
lib/R/library/Rhtslib/Meta/vignette.rds
lib/R/library/Rhtslib/NAMESPACE
lib/R/library/Rhtslib/NEWS
lib/R/library/Rhtslib/R/Rhtslib
lib/R/library/Rhtslib/R/Rhtslib.rdb
lib/R/library/Rhtslib/R/Rhtslib.rdx
lib/R/library/Rhtslib/doc/Rhtslib.R
lib/R/library/Rhtslib/doc/Rhtslib.Rmd
lib/R/library/Rhtslib/doc/Rhtslib.html
lib/R/library/Rhtslib/doc/index.html
lib/R/library/Rhtslib/help/AnIndex
lib/R/library/Rhtslib/help/Rhtslib.rdb
lib/R/library/Rhtslib/help/Rhtslib.rdx
lib/R/library/Rhtslib/help/aliases.rds
lib/R/library/Rhtslib/help/paths.rds
lib/R/library/Rhtslib/html/00Index.html
lib/R/library/Rhtslib/html/R.css
lib/R/library/Rhtslib/include/README
lib/R/library/Rhtslib/include/bam.c
lib/R/library/Rhtslib/include/bam.h
lib/R/library/Rhtslib/include/bam_cat.c
lib/R/library/Rhtslib/include/bam_plbuf.c
lib/R/library/Rhtslib/include/bam_plbuf.h
lib/R/library/Rhtslib/include/bam_sort.c
lib/R/library/Rhtslib/include/bam_sort.h
lib/R/library/Rhtslib/include/bedidx.c
lib/R/library/Rhtslib/include/bedidx.h
lib/R/library/Rhtslib/include/htslib/bgzf.h
lib/R/library/Rhtslib/include/htslib/cram.h
lib/R/library/Rhtslib/include/htslib/faidx.h
lib/R/library/Rhtslib/include/htslib/hfile.h
lib/R/library/Rhtslib/include/htslib/hts.h
lib/R/library/Rhtslib/include/htslib/hts_defs.h
lib/R/library/Rhtslib/include/htslib/hts_endian.h
lib/R/library/Rhtslib/include/htslib/hts_expr.h
lib/R/library/Rhtslib/include/htslib/hts_log.h
lib/R/library/Rhtslib/include/htslib/hts_os.h
lib/R/library/Rhtslib/include/htslib/kbitset.h
lib/R/library/Rhtslib/include/htslib/kfunc.h
lib/R/library/Rhtslib/include/htslib/khash.h
lib/R/library/Rhtslib/include/htslib/khash_str2int.h
lib/R/library/Rhtslib/include/htslib/klist.h
lib/R/library/Rhtslib/include/htslib/knetfile.h
lib/R/library/Rhtslib/include/htslib/kroundup.h
lib/R/library/Rhtslib/include/htslib/kseq.h
lib/R/library/Rhtslib/include/htslib/ksort.h
lib/R/library/Rhtslib/include/htslib/kstring.h
lib/R/library/Rhtslib/include/htslib/regidx.h
lib/R/library/Rhtslib/include/htslib/sam.h
lib/R/library/Rhtslib/include/htslib/synced_bcf_reader.h
lib/R/library/Rhtslib/include/htslib/tbx.h
lib/R/library/Rhtslib/include/htslib/thread_pool.h
lib/R/library/Rhtslib/include/htslib/vcf.h
lib/R/library/Rhtslib/include/htslib/vcf_sweep.h
lib/R/library/Rhtslib/include/htslib/vcfutils.h
lib/R/library/Rhtslib/include/sam_opts.c
lib/R/library/Rhtslib/include/sam_opts.h
lib/R/library/Rhtslib/include/sam_utils.c
lib/R/library/Rhtslib/include/sam_utils.h
lib/R/library/Rhtslib/include/samtools-1.7-compat.h
lib/R/library/Rhtslib/include/samtools.h
lib/R/library/Rhtslib/libs/Rhtslib.so
lib/R/library/Rhtslib/testdata/auxf#values.sam
lib/R/library/Rhtslib/testdata/auxf#values_java.cram
lib/R/library/Rhtslib/testdata/auxf.fa
lib/R/library/Rhtslib/testdata/auxf.fa.fai
lib/R/library/Rhtslib/testdata/c1#bounds.sam
lib/R/library/Rhtslib/testdata/c1#clip.sam
lib/R/library/Rhtslib/testdata/c1#noseq.sam
lib/R/library/Rhtslib/testdata/c1#pad1.sam
lib/R/library/Rhtslib/testdata/c1#pad2.sam
lib/R/library/Rhtslib/testdata/c1#pad3.sam
lib/R/library/Rhtslib/testdata/c1#unknown.sam
lib/R/library/Rhtslib/testdata/c1.fa
lib/R/library/Rhtslib/testdata/c1.fa.fai
lib/R/library/Rhtslib/testdata/c2#pad.sam
lib/R/library/Rhtslib/testdata/c2.fa
lib/R/library/Rhtslib/testdata/c2.fa.fai
lib/R/library/Rhtslib/testdata/ce#1.sam
lib/R/library/Rhtslib/testdata/ce#1000.sam
lib/R/library/Rhtslib/testdata/ce#2.sam
lib/R/library/Rhtslib/testdata/ce#5.sam
lib/R/library/Rhtslib/testdata/ce#5b.sam
lib/R/library/Rhtslib/testdata/ce#5b_java.cram
lib/R/library/Rhtslib/testdata/ce#large_seq.sam
lib/R/library/Rhtslib/testdata/ce#supp.sam
lib/R/library/Rhtslib/testdata/ce#tag_depadded.sam
lib/R/library/Rhtslib/testdata/ce#tag_padded.sam
lib/R/library/Rhtslib/testdata/ce#unmap.sam
lib/R/library/Rhtslib/testdata/ce#unmap1.sam
lib/R/library/Rhtslib/testdata/ce#unmap2.sam
lib/R/library/Rhtslib/testdata/ce.fa
lib/R/library/Rhtslib/testdata/ce.fa.fai
lib/R/library/Rhtslib/testdata/colons.bam
lib/R/library/Rhtslib/testdata/fieldarith.sam
lib/R/library/Rhtslib/testdata/formatcols.vcf
lib/R/library/Rhtslib/testdata/formatmissing-out.vcf
lib/R/library/Rhtslib/testdata/formatmissing.vcf
lib/R/library/Rhtslib/testdata/index.sam
lib/R/library/Rhtslib/testdata/index.vcf
lib/R/library/Rhtslib/testdata/index2.sam
lib/R/library/Rhtslib/testdata/index_dos.sam
lib/R/library/Rhtslib/testdata/md#1.sam
lib/R/library/Rhtslib/testdata/md.fa
lib/R/library/Rhtslib/testdata/md.fa.fai
lib/R/library/Rhtslib/testdata/modhdr.expected.vcf
lib/R/library/Rhtslib/testdata/no_hdr_sq_1.bam
lib/R/library/Rhtslib/testdata/no_hdr_sq_1.expected.sam
lib/R/library/Rhtslib/testdata/noroundtrip-out.vcf
lib/R/library/Rhtslib/testdata/noroundtrip.vcf
lib/R/library/Rhtslib/testdata/range.bam
lib/R/library/Rhtslib/testdata/range.cram
lib/R/library/Rhtslib/testdata/realn01.fa
lib/R/library/Rhtslib/testdata/realn01.fa.fai
lib/R/library/Rhtslib/testdata/realn01.sam
lib/R/library/Rhtslib/testdata/realn01_exp-a.sam
lib/R/library/Rhtslib/testdata/realn01_exp-e.sam
lib/R/library/Rhtslib/testdata/realn01_exp.sam
lib/R/library/Rhtslib/testdata/realn02-r.sam
lib/R/library/Rhtslib/testdata/realn02.fa
lib/R/library/Rhtslib/testdata/realn02.fa.fai
lib/R/library/Rhtslib/testdata/realn02.sam
lib/R/library/Rhtslib/testdata/realn02_exp-a.sam
lib/R/library/Rhtslib/testdata/realn02_exp-e.sam
lib/R/library/Rhtslib/testdata/realn02_exp.sam
lib/R/library/Rhtslib/testdata/realn03.fa
lib/R/library/Rhtslib/testdata/realn03.fa.fai
lib/R/library/Rhtslib/testdata/realn03.sam
lib/R/library/Rhtslib/testdata/realn03_exp.sam
lib/R/library/Rhtslib/testdata/tabix/bed_file.bed
lib/R/library/Rhtslib/testdata/tabix/gff_file.gff
lib/R/library/Rhtslib/testdata/tabix/large_chr.vcf
lib/R/library/Rhtslib/testdata/tabix/vcf_file.bcf
lib/R/library/Rhtslib/testdata/tabix/vcf_file.vcf
lib/R/library/Rhtslib/testdata/test-vcf-hdr-in.vcf
lib/R/library/Rhtslib/testdata/vcf_meta_meta.vcf
lib/R/library/Rhtslib/testdata/xx#MD.sam
lib/R/library/Rhtslib/testdata/xx#MD2.sam
lib/R/library/Rhtslib/testdata/xx#blank.sam
lib/R/library/Rhtslib/testdata/xx#large_aux.sam
lib/R/library/Rhtslib/testdata/xx#large_aux2.sam
lib/R/library/Rhtslib/testdata/xx#large_aux_java.cram
lib/R/library/Rhtslib/testdata/xx#minimal.sam
lib/R/library/Rhtslib/testdata/xx#pair.sam
lib/R/library/Rhtslib/testdata/xx#repeated.sam
lib/R/library/Rhtslib/testdata/xx#rg.sam
lib/R/library/Rhtslib/testdata/xx#tlen.sam
lib/R/library/Rhtslib/testdata/xx#tlen2.sam
lib/R/library/Rhtslib/testdata/xx#triplet.sam
lib/R/library/Rhtslib/testdata/xx#unsorted.sam
lib/R/library/Rhtslib/testdata/xx.fa
lib/R/library/Rhtslib/testdata/xx.fa.fai
lib/R/library/Rhtslib/usrlib/libhts.a
lib/R/library/Rhtslib/usrlib/libhts.so
lib/R/library/Rhtslib/usrlib/libhts.so.2
