Makefile
bin/.alloshp-post-link.sh
bin/WGA
bin/WGA.bak
bin/lib/Cgaln/.gitignore
bin/lib/Cgaln/BA.h
bin/lib/Cgaln/COPYING
bin/lib/Cgaln/Cgaln
bin/lib/Cgaln/ChangeLog
bin/lib/Cgaln/GPL
bin/lib/Cgaln/LICENSE
bin/lib/Cgaln/Makefile
bin/lib/Cgaln/Makefile.bak
bin/lib/Cgaln/NA.h
bin/lib/Cgaln/README.md
bin/lib/Cgaln/aln_base.c
bin/lib/Cgaln/aln_block.c
bin/lib/Cgaln/aln_colony.c
bin/lib/Cgaln/cgaln.c
bin/lib/Cgaln/cgaln.h
bin/lib/Cgaln/dp.c
bin/lib/Cgaln/dp.h
bin/lib/Cgaln/gv.c
bin/lib/Cgaln/instance.c
bin/lib/Cgaln/iterativealign.c
bin/lib/Cgaln/maketable
bin/lib/Cgaln/maketable.c
bin/lib/Cgaln/output.c
bin/lib/Cgaln/readfasta.c
bin/lib/Cgaln/readfasta.h
bin/lib/Cgaln/readtable.c
bin/lib/Cgaln/seq.h
bin/lib/Cgaln/util.c
bin/lib/Cgaln/util.h
bin/lib/Memory/META.yml
bin/lib/Memory/README
bin/lib/Memory/Usage.pm
bin/lib/README.md
bin/lib/Resources.pm
bin/utils/Red2Ensembl.py
bin/utils/Red2Ensembl.py.bak
bin/utils/aln2fasta.pl
bin/utils/collapse_aln.pl
bin/utils/dothist.R
bin/utils/fasta2dot.pl
bin/utils/mapcoords.pl
bin/utils/rm_double_lines.pl
bin/vcf2alignment
bin/vcf2synteny
bin/version.txt
sample_data/Bdis.fna.gz
sample_data/BdisBd2_BstaChr01.vcf.gz
sample_data/Bsta.fna.gz
sample_data/README.txt
sample_data/config.outg.synteny.tsv
sample_data/config.synteny.tsv
sample_data/config.tsv
sample_data/outg_Osat.fna.gz
