2015-11-05  Ryuichiro Nakato <rnakato@iam.u-tokyo.ac.jp>
	- Upload to github
	
2013-12-25  Ryuichiro Nakato <rnakato@iam.u-tokyo.ac.jp>
	Version 1.2.3
	- bug fix in cgaln.c

2012-01-18  Ryuichiro Nakato <rnakato@iam.u-tokyo.ac.jp>
	Version 1.2.2
	- refine some functions

2012-01-09  Ryuichiro Nakato <rnakato@iam.u-tokyo.ac.jp>
	Version 1.2.1
	- bug fix in readtable.c

2012-01-08  Ryuichiro Nakato <rnakato@iam.u-tokyo.ac.jp>
	Version 1.2.0
	- rename "main.c" to "cgaln.c"
	- add "instance.c", "cgaln.h", "maketable.h", "readfasta.h", "util.h", "BA.h", "NA.h" and "dp.h"
	- refine several functions
	- change Cgaln output from <stdout> to <file stream> (add "-o" option)
	- become possible to output with fasta format (change "-Ens" option to "-otype" option)
	- become possible to specify table directory name (default: CgalnTable)
	- become possible to specify input file which is not in current directory
	- "maketable" makes a summary txt in the table directory
	- merge tables of multifasta file
	- merge ".logpois" and ".logpois_2" into ".poistable"
	- some bug fixes in extending HSPs, DP and output
Important note: Cgaln and maketable version 1.2.0 are not compatible with the previous version. Please remake all tables when upgrading.

2010-09-06  Ryuichiro Nakato <rnakato@iam.u-tokyo.ac.jp>
	Version 1.1.0
	- some bug fixes in Finding HSPs with shorter seed.
	- change parameter for hsp chaining.
	- add "util.c" with some functions.
	- change the part of Cgaln output (time, blocksize etc.) to <stderr>.
	- Add this ChangeLog

2009-12-18  Ryuichiro Nakato <rnakato@iam.u-tokyo.ac.jp>
	Version 1.0.0
	First commit.

