How to do Image Processing with GPUs — Anaconda Enterprise 4.4 documentation

Anaconda Enterprise: Documentation

# How to do Image Processing with GPUs

## Overview

To demonstrate the capability of running a distributed job in PySpark using a GPU, this example uses NumbaPro and the CUDA platform for image analysis. This example executes 2-dimensional FFT convolution on images in grayscale and compares the execution time of CPU-based and GPU-based calculations.

## Who is this for?

This how-to is for users of a Spark cluster who wish to run Python code using the YARN resource manager. This how-to will show you how to integrate third-party Python libraries with Spark.

## Image processing summary

1. Before you start
2. Install dependencies
3. Load data into HDFS
4. Running the Job
5. Troubleshooting
6. Further information

## Before you start

For this example, you’ll need Spark running with the YARN resource manager. You can install Spark and YARN using an enterprise Hadoop distribution such as Cloudera CDH or Hortonworks HDP.

You will also need valid Amazon Web Services (AWS) credentials in order to download the example data.

For this example, we recommend the use of the GPU-enabled AWS instance type `g2.2xlarge` and the AMI `ami-12fd8178` (us-east-1 region), which has CUDA 7.0 and the NVIDIA drivers pre-installed. An example profile (to be placed in `~/.acluster/profiles.d/gpu_profile.yaml`) is shown below:

    name: gpu_profile
    node_id: ami-12fd8178  # Ubuntu 14.04, Cuda 7.0, us-east-1 region
    node_type: g2.2xlarge
    num_nodes: 4
    provider: aws_east
    user: ubuntu

To execute this example, download the: `spark-numbapro.py example script` or `spark-numbapro.ipynb example notebook`.

If you wish to use the `spark-numbapro.ipynb example notebook` the Jupyter Notebook plugin can be installed on the cluster using the following command:

    acluster install notebook

Once the Jupyter Notebook plugin is installed, you can view Jupyter Notebook in your browser using the following command:

    acluster open notebook

## Install dependencies

If you have permission to install packages with `acluster` you can install the required packages on all nodes using the following command.

    acluster conda install scipy matplotlib numbapro PIL

## Load data into HDFS

First, we will load the sample text data into the HDFS data store. The following script will transfer sample image data (approximately 1.1 GB) from a public Amazon S3 bucket to the HDFS data store on the cluster.

Download the `cluster-download-data.py script` to your cluster and insert your Amazon AWS credentials in the `AWS_KEY` and `AWS_SECRET` variables.

    import subprocess

    AWS_KEY = 'YOUR_AWS_KEY'
    AWS_SECRET = 'YOUR_AWS_SECRET'

    s3_path = 's3n://{0}:{1}@blaze-data/dogs-cats-img/images'.format(AWS_KEY, AWS_SECRET)
    cmd = ['hadoop', 'distcp', s3_path, 'hdfs:///tmp/dogs-cats']
    subprocess.call(cmd)

Note: The `hadoop distcp` command might cause HDFS to fail on smaller instance sizes due to memory limits.

Run the `cluster-download-data.py` script on the cluster.

    python cluster-download-data.py

After a few minutes, the image data will be in the HDFS data store on the cluster and ready for analysis.

## Running the Job

Run the `spark-numbapro.py` script on the Spark cluster using spark-submit. The output shows the image processing execution times for the CPU-based vs. GPU-based calculations.

    54.164.123.31: Using Spark's default log4j profile: org/apache/spark/log4j-defaults.properties
    15/11/09 02:33:21 INFO SparkContext: Running Spark version 1.5.1

    [...]

    15/11/09 02:33:45 INFO TaskSetManager: Finished task 6.0 in stage 1.0 (TID 13)
    in 106 ms on ip-172-31-9-24.ec2.internal (7/7)
    15/11/09 02:33:45 INFO YarnScheduler: Removed TaskSet 1.0, whose tasks have
    all completed, from pool
    15/11/09 02:33:45 INFO DAGScheduler: ResultStage 1
    (collect at /tmp/anaconda-cluster/spark-numbapro.py:106) finished in 4.844 s
    15/11/09 02:33:45 INFO DAGScheduler: Job 1 finished:
    collect at /tmp/anaconda-cluster/spark-numbapro.py:106, took 4.854970 s

    10 images
    CPU: 6.91735601425
    GPU: 4.88133311272

    [...]

    15/11/09 02:34:27 INFO TaskSetManager: Finished task 255.0 in stage 3.0 (TID 525)
     in 139 ms on ip-172-31-9-24.ec2.internal (256/256)
    15/11/09 02:34:27 INFO YarnScheduler: Removed TaskSet 3.0, whose tasks have
    all completed, from pool
    15/11/09 02:34:27 INFO DAGScheduler: ResultStage 3
    (collect at /tmp/anaconda-cluster/spark-numbapro.py:126) finished in 19.340 s
    15/11/09 02:34:27 INFO DAGScheduler: Job 3 finished:
    collect at /tmp/anaconda-cluster/spark-numbapro.py:126, took 19.400670 s

    500 images
    CPU: 22.1282501221
    GPU: 19.8209779263

## Troubleshooting

If something goes wrong consult the FAQ / Known issues page.

## Further information

See the Spark and PySpark documentation pages for more information.

For more information on NumbaPro see the NumbaPro documentation.